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AT2G30050.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 0.500
nucleus 0.500
ASURE: cytosol,nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31520498 (2020): mitochondrion
  • PMID:30961429 (2019): nucleus
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:22550958 (2012): plastid
  • PMID:15496452 (2005): nucleus
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : transducin family protein / WD-40 repeat family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
transducin family protein / WD-40 repeat family protein; FUNCTIONS IN: nucleotide binding; INVOLVED IN: membrane budding; LOCATED IN: nucleolus, heterotrimeric G-protein complex; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), WD40 repeat, subgroup (InterPro:IPR019781), G-protein beta WD-40 repeat, region (InterPro:IPR020472); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT3G01340.2); Has 24526 Blast hits to 15097 proteins in 577 species: Archae - 22; Bacteria - 4838; Metazoa - 8772; Fungi - 5346; Plants - 2605; Viruses - 0; Other Eukaryotes - 2943 (source: NCBI BLink).
Protein Annotations
BioGrid:2905eggNOG:ENOG410XPFMeggNOG:KOG1332EMBL:AC004165
EMBL:AC004680EMBL:AF412112EMBL:AY087553EMBL:AY124848
EMBL:CP002685EnsemblPlants:AT2G30050EnsemblPlants:AT2G30050.1entrez:817556
Gene3D:2.130.10.10GeneID:817556Genevisible:O64740GO:GO:0005635
GO:GO:0005643GO:GO:0005730GO:GO:0005783GO:GO:0005794
GO:GO:0015031GO:GO:0016192GO:GO:0051028Gramene:AT2G30050.1
hmmpanther:PTHR11024HOGENOM:HOG000216895InParanoid:O64740IntAct:O64740
InterPro:IPR001680InterPro:IPR015943InterPro:IPR017986InterPro:IPR020472
KEGG:ath:AT2G30050KO:K14004OMA:WREDNDRPaxDb:O64740
Pfam:O64740Pfam:PF00400Pfscan:PS50082Pfscan:PS50294
PhylomeDB:O64740PIR:T00593PRIDE:O64740PRINTS:PR00320
PRO:PR:O64740ProMEX:O64740PROSITE:PS50082PROSITE:PS50294
ProteinModelPortal:O64740Proteomes:UP000006548Reactome:R-ATH-204005RefSeq:NP_180566.1
SMART:SM00320SMR:O64740STRING:3702.AT2G30050.1SUPFAM:SSF50978
TAIR:AT2G30050UniGene:At.25577UniGene:At.74333UniProt:O64740
Coordinates (TAIR10) chr2:+:12825540..12826448
Molecular Weight (calculated) 32644.10 Da
IEP (calculated) 5.53
GRAVY (calculated) -0.29
Length 302 amino acids
Sequence (TAIR10)
(BLAST)
001: MPGQKIETGH EDIVHDVQMD YYGKRIATAS SDCTIKITGV SNNGGSQQLA TLTGHRGPVW EVAWAHPKYG SILASCSYDG QVILWKEGNQ NQWTQDHVFT
101: DHKSSVNSIA WAPHDIGLSL ACGSSDGNIS VFTARADGGW DTSRIDQAHP VGVTSVSWAP ATAPGALVSS GLLDPVYKLA SGGCDNTVKV WKLANGSWKM
201: DCFPALQKHT DWVRDVAWAP NLGLPKSTIA SGSQDGKVII WTVGKEGEQW EGKVLKDFMT PVWRVSWSLT GNLLAVSDGN NNVTVWKEAV DGEWEQVTAV
301: EP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)