AT3G05940.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.941 What is SUBAcon? |
|
||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : Protein of unknown function (DUF300) | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
Protein of unknown function (DUF300); INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF300 (InterPro:IPR005178); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF300) (TAIR:AT5G26740.3); Has 926 Blast hits to 920 proteins in 197 species: Archae - 0; Bacteria - 0; Metazoa - 354; Fungi - 191; Plants - 245; Viruses - 0; Other Eukaryotes - 136 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr3:-:1777592..1779648 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 47341.80 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 8.17 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.30 | ||||||||||||||||||||||||||||
| Length | 422 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MADLLPIYLI ILAFLCTVGA IALALFHIYK HLLNYTEPIY QRYIVRIVFM VPVYALMSFL ALVLPKSSIY FNSIREVYEA WVIYNFLSLC LAWVGGPGSV 101: VISLTGRSLK PSWHLMTCCI PPLPLDGRFI RRCKQGCLQF VILKPILVAV TLVLYAKGKY KDGNFSPDQS YLYLTIIYTI SYTVALYALV LFYVACKDLL 201: QPFNPVPKFV IIKSVVFLTY WQGVLVFLFA KSGFIRDEEE AALFQNFIIC VEMLIAAAAH FYAFPYKEYA EANVGGARSF SGSLAHALML NDFYHDTVHQ 301: FAPTYHDYVL YNHNDGGEEG TRKYRARTFV PTGQEMDAVR KNKHMFGNKI DGVSVSSQSS ETSTPKTSGV TYDPARPESM KSSLLVDASD SVSTMYDMSL 401: IDIDISSYPS KVPSANISGG PK |
||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)