AT5G27210.1::SUBA5

AT5G27210.1

Subcellular Consensus
(Prediction and Experimental)

min:

:max

SUBAcon:
plasma membrane 0.949
What is SUBAcon?

Predictors

External Curations

no data

Experimental Localisations and PPI

FP	MS/MS	PPI
		PMID:24833385 (2014): AT1G16170.1:None: PMID:24833385 (2014): AT1G59730.1:None: PMID:24833385 (2014): AT3G28220.1:None: PMID:24833385 (2014): AT5G11680.1:None: PMID:24833385 (2014): AT5G03345.1:None: PMID:24833385 (2014): AT1G07860.1:None: PMID:24833385 (2014): AT1G27290.1:None: PMID:24833385 (2014): AT1G47640.1:None: PMID:24833385 (2014): AT3G13175.1:None: PMID:24833385 (2014): AT5G52420.1:None: PMID:24833385 (2014): AT4G05380.1:None: PMID:24833385 (2014): AT4G37370.1:None: PMID:24833385 (2014): AT4G23400.1:None: PMID:24833385 (2014): AT4G30850.1:None: PMID:24833385 (2014): AT4G37680.1:None: PMID:24833385 (2014): AT3G17000.1:None: PMID:24833385 (2014): AT1G17280.1:None: PMID:24833385 (2014): AT1G31812.1:None: PMID:24833385 (2014): AT5G06320.1:None: PMID:24833385 (2014): AT4G14455.1:None: PMID:24833385 (2014): AT4G05370.1:None: PMID:24833385 (2014): AT2G41705.1:None: PMID:24833385 (2014): AT1G47330.1:None: PMID:24833385 (2014): AT1G11940.1:None: PMID:24833385 (2014): AT2G24180.1:None: PMID:24833385 (2014): AT2G28315.1:None: PMID:24833385 (2014): AT3G10640.1:None: PMID:24833385 (2014): AT2G26180.1:None: PMID:24833385 (2014): AT3G48890.1:None: PMID:24833385 (2014): AT5G11890.1:None: PMID:24833385 (2014): AT1G14020.1:None: PMID:24833385 (2014): AT1G34640.1:None: PMID:24833385 (2014): AT3G66654.1:None: PMID:24833385 (2014): AT4G30500.1:None: PMID:24833385 (2014): AT5G49540.1:None: PMID:24833385 (2014): AT3G62560.1:None: PMID:24833385 (2014): AT1G13770.1:None: PMID:24833385 (2014): AT4G25360.1:None: PMID:18671868 (2008): AT2G26300.1:ubiquitin reconstruction:

SUBAcon links
AGI-AGI relationships

Coexpression

PPI

AT5G02910.1 nucleus [5.32]
AT2G19350.1 vacuole [4.88]
AT3G05940.1 plasma membrane [4.86]
AT4G38570.1 endoplasmic reticulum, vacuole [4.82]
AT1G11020.1 plasma membrane [4.63]
AT1G44960.1 plasma membrane [4.53]
AT3G56820.1 golgi [4.49]
AT3G12300.1 extracellular [4.39]
AT4G04860.1 endoplasmic reticulum [4.33]
AT3G26750.1 nucleus [4.29]

AT4G05380.1 cytosol
AT1G31812.1 cytosol
AT1G47640.1 endoplasmic reticulum
AT3G48890.1 endoplasmic reticulum
AT3G62560.1 endoplasmic reticulum
AT3G17000.1 endoplasmic reticulum
AT3G13175.1 endoplasmic reticulum
AT2G24180.1 endoplasmic reticulum
AT4G25360.1 endoplasmic reticulum
AT1G27290.1 endoplasmic reticulum
AT4G37370.1 endoplasmic reticulum
AT5G03345.1 endoplasmic reticulum
AT5G52420.1 endoplasmic reticulum
AT1G07860.1 endoplasmic reticulum
AT1G34640.1 extracellular
AT4G05370.1 extracellular
AT4G30850.1 golgi
AT1G11940.1 golgi
AT4G14455.1 golgi
AT3G66654.1 golgi
AT4G37680.1 golgi
AT1G59730.1 golgi
AT1G14020.1 golgi
AT1G17280.1 golgi
AT4G30500.1 endoplasmic reticulum, golgi
AT3G10640.1 nucleus
AT2G26180.1 nucleus
AT1G47330.1 plasma membrane
AT5G11890.1 plasma membrane
AT5G11680.1 plasma membrane
AT5G06320.1 plasma membrane
AT1G16170.1 plasma membrane
AT4G23400.1 plasma membrane
AT2G28315.1 plasma membrane
AT2G41705.1 plasma membrane
AT3G28220.1 vacuole
AT5G49540.1 vacuole
AT1G13770.1 vacuole

Description (TAIR10)

protein_coding : Protein of unknown function, transmembrane-40

Curator
Summary (TAIR10)

Computational
Description (TAIR10)

Protein of unknown function, transmembrane-40; CONTAINS InterPro DOMAIN/s: Protein of unknown function, transmembrane-40 (InterPro:IPR018781); BEST Arabidopsis thaliana protein match is: Protein of unknown function, transmembrane-40 (TAIR:AT3G05010.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

Protein Annotations

eggNOG:ENOG410XRXY	eggNOG:KOG4536	EMBL:CP002688	EnsemblPlants:AT5G27210
EnsemblPlants:AT5G27210.1	entrez:832779	GeneID:832779	GO:GO:0016021
Gramene:AT5G27210.1	hmmpanther:PTHR15876	InParanoid:F4K2U8	InterPro:IPR018781
iPTMnet:F4K2U8	KEGG:ath:AT5G27210	OMA:SVCYHAL	PANTHER:PTHR15876
PaxDb:F4K2U8	Pfam:PF10160	PRIDE:F4K2U8	ProteinModelPortal:F4K2U8
Proteomes:UP000006548	RefSeq:NP_198073.1	STRING:3702.AT5G27210.1	TAIR:AT5G27210
TMHMM:TMhelix	UniGene:At.10290	UniProt:F4K2U8

Coordinates (TAIR10)

chr5:-:9572333..9574075

Molecular Weight (calculated)

34139.60 Da

IEP (calculated)

6.01

GRAVY (calculated)

0.48

Length

297 amino acids

Sequence (TAIR10)
(BLAST)

001: MRVLDEIAES PFLISPLNPN STANGYRWVD KCHGFLHNTV LVAASLFFVA YLAYEAKKSL SKLSNRRSYI MIAYYGCLWL VSLLNLAWCC LQGWECTPGK
101: EVVWNLLTLF TTSGMLFLEV SLVAFLFQGN YASGAEALTR TFLISGFIVA LDLLLKAIFL FGFGVPLFID NNENGKTFKW GLWIIHKLLL TGVYGMVFLM
201: YNSRWREKLP ARPAFYNYII IMFALYSLYL VASAFTANNA HFGFWLYGIM SVCYHALYLP LLYITFLADF FQEEDLNLEN VYYSEMKDAG FFDSDWE