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AT1G44960.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.907
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : SNARE associated Golgi protein family
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
SNARE associated Golgi protein family; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: SNARE associated Golgi protein (InterPro:IPR015414); Has 1433 Blast hits to 1432 proteins in 513 species: Archae - 4; Bacteria - 1059; Metazoa - 2; Fungi - 0; Plants - 147; Viruses - 0; Other Eukaryotes - 221 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0398eggNOG:KOG3140EMBL:AC020576EMBL:AY072180
EMBL:AY133760EMBL:CP002684EnsemblPlants:AT1G44960EnsemblPlants:AT1G44960.1
entrez:841061GeneID:841061GO:GO:0005886GO:GO:0016021
Gramene:AT1G44960.1hmmpanther:PTHR12677hmmpanther:PTHR12677:SF2InterPro:IPR015414
InterPro:IPR032816KEGG:ath:AT1G44960OMA:RLGIWAIPANTHER:PTHR12677
Pfam:PF09335Proteomes:UP000006548RefSeq:NP_175116.2STRING:3702.AT1G44960.1
TAIR:AT1G44960TMHMM:TMhelixUniGene:At.38763UniProt:Q9LPD5
Coordinates (TAIR10) chr1:+:16999576..17001447
Molecular Weight (calculated) 28224.30 Da
IEP (calculated) 10.06
GRAVY (calculated) 0.43
Length 261 amino acids
Sequence (TAIR10)
(BLAST)
001: MKKWLAIAAT VAIIAIIVRQ GTTQYGWNKE AALEKLKEWS DRLGIWAIPT YVAVHTITLA LCLPHAVFFE AGASMLFGFL PALLCVFSAK VLAASFSFWI
101: GRFVFKSSTR ATGWAHSNKY FNILSRGVER DGWKFVLLAR FSPIPSYVIN YALAATEVRF VADFLFPTVI GCLPMILQNA SVGSLAGMAV ASVAGKQKSQ
201: VWGYVFPVLG ILSSVLISLR IKKYSAGITE ASSDTSANNS SLASSETANP AYGTDGSKKS E
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)