AT1G44960.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:plasma membrane 0.907 What is SUBAcon? |
|
||||||||||||||||||||||||||||
Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||
Description (TAIR10) | protein_coding : SNARE associated Golgi protein family | ||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||
Computational Description (TAIR10) |
SNARE associated Golgi protein family; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: SNARE associated Golgi protein (InterPro:IPR015414); Has 1433 Blast hits to 1432 proteins in 513 species: Archae - 4; Bacteria - 1059; Metazoa - 2; Fungi - 0; Plants - 147; Viruses - 0; Other Eukaryotes - 221 (source: NCBI BLink). | ||||||||||||||||||||||||||||
Protein Annotations |
|
||||||||||||||||||||||||||||
Coordinates (TAIR10) | chr1:+:16999576..17001447 | ||||||||||||||||||||||||||||
Molecular Weight (calculated) | 28224.30 Da | ||||||||||||||||||||||||||||
IEP (calculated) | 10.06 | ||||||||||||||||||||||||||||
GRAVY (calculated) | 0.43 | ||||||||||||||||||||||||||||
Length | 261 amino acids | ||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MKKWLAIAAT VAIIAIIVRQ GTTQYGWNKE AALEKLKEWS DRLGIWAIPT YVAVHTITLA LCLPHAVFFE AGASMLFGFL PALLCVFSAK VLAASFSFWI 101: GRFVFKSSTR ATGWAHSNKY FNILSRGVER DGWKFVLLAR FSPIPSYVIN YALAATEVRF VADFLFPTVI GCLPMILQNA SVGSLAGMAV ASVAGKQKSQ 201: VWGYVFPVLG ILSSVLISLR IKKYSAGITE ASSDTSANNS SLASSETANP AYGTDGSKKS E |
||||||||||||||||||||||||||||
See Also |
|
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)