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AT1G51930.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 0.394
endoplasmic reticulum 0.332
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data
Description (TAIR10) protein_coding : RING/U-box superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT5G41450.1); Has 8601 Blast hits to 8582 proteins in 272 species: Archae - 0; Bacteria - 0; Metazoa - 2188; Fungi - 755; Plants - 4482; Viruses - 20; Other Eukaryotes - 1156 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG41121N2eggNOG:KOG0800EMBL:BT015124EMBL:BT015636
EMBL:CP002684EnsemblPlants:AT1G51930EnsemblPlants:AT1G51930.1entrez:841621
Gene3D:3.30.40.10GeneID:841621GO:GO:0008270GO:GO:0016021
Gramene:AT1G51930.1hmmpanther:PTHR14155HOGENOM:HOG000141530InterPro:IPR001841
InterPro:IPR013083KEGG:ath:AT1G51930OMA:HLLCIDSPfam:PF13639
Pfscan:PS50089PhylomeDB:Q6AWX4PROSITE:PS50089Proteomes:UP000006548
RefSeq:NP_175605.1SMART:SM00184SMR:Q6AWX4SUPFAM:SSF57850
TAIR:AT1G51930TMHMM:TMhelixUniGene:At.64866UniProt:Q6AWX4
Coordinates (TAIR10) chr1:-:19294838..19295236
Molecular Weight (calculated) 14934.00 Da
IEP (calculated) 4.55
GRAVY (calculated) -0.29
Length 132 amino acids
Sequence (TAIR10)
(BLAST)
001: MDTIDEILIG FSIIGLIVIV IANCCDNIDP PPTRLPPETI HQTVQPQQDI ETGQSKALVF KDIKEEEGGR EEEGGGKRFC PICLEEYEDD HQIRRLRNCG
101: HVFHLLCIDS WLTQKQNCPS CRRSVDLMSL GL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)