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AT1G07400.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : HSP20-like chaperones superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
HSP20-like chaperones superfamily protein; CONTAINS InterPro DOMAIN/s: Heat shock protein Hsp20 (InterPro:IPR002068), HSP20-like chaperone (InterPro:IPR008978); BEST Arabidopsis thaliana protein match is: HSP20-like chaperones superfamily protein (TAIR:AT1G59860.1); Has 7238 Blast hits to 7237 proteins in 1623 species: Archae - 225; Bacteria - 4290; Metazoa - 129; Fungi - 318; Plants - 1626; Viruses - 0; Other Eukaryotes - 650 (source: NCBI BLink).
Protein Annotations
BioGrid:22493eggNOG:COG0071eggNOG:KOG0710EMBL:AC022464
EMBL:AK118848EMBL:AY086856EMBL:BT005424EMBL:CP002684
EnsemblPlants:AT1G07400EnsemblPlants:AT1G07400.1entrez:837252Gene3D:2.60.40.790
GeneID:837252Genevisible:Q9LNW0GO:GO:0005737GO:GO:0006979
GO:GO:0009408GO:GO:0043621Gramene:AT1G07400.1hmmpanther:PTHR11527
hmmpanther:PTHR11527:SF158HOGENOM:HOG000251751InParanoid:Q9LNW0IntAct:Q9LNW0
InterPro:IPR002068InterPro:IPR008978InterPro:IPR031107KEGG:ath:AT1G07400
KO:K13993MINT:MINT-8375074OMA:YENKDERPANTHER:PTHR11527
PaxDb:Q9LNW0Pfam:PF00011Pfam:Q9LNW0Pfscan:PS01031
PhylomeDB:Q9LNW0PRIDE:Q9LNW0PRO:PR:Q9LNW0PROSITE:PS01031
ProteinModelPortal:Q9LNW0Proteomes:UP000006548RefSeq:NP_172220.1SMR:Q9LNW0
STRING:3702.AT1G07400.1SUPFAM:SSF49764TAIR:AT1G07400UniGene:At.42302
UniProt:Q9LNW0
Coordinates (TAIR10) chr1:+:2275148..2275621
Molecular Weight (calculated) 17829.10 Da
IEP (calculated) 6.29
GRAVY (calculated) -0.68
Length 157 amino acids
Sequence (TAIR10)
(BLAST)
001: MSLIPSFFGN NRRSNSIFDP FSLDVWDPFK ELQFPSSLSG ETSAITNARV DWKETAEAHV FKADLPGMKK EEVKVEIEDD SVLKISGERH VEKEEKQDTW
101: HRVERSSGQF SRKFKLPENV KMDQVKASME NGVLTVTVPK VEEAKKKAQV KSIDISG
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)