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AT5G51440.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
mitochondrion 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
FP Images

Arabidopsis cell culture (mitochondrial marker)

At5g51440-GFP
(full-length)
mitochondrial marker-RFPoverlay

Images by Sandra Tanz

Arabidopsis cell culture (plastidal marker)

overlay

Images by Sandra Tanz
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : HSP20-like chaperones superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
HSP20-like chaperones superfamily protein; CONTAINS InterPro DOMAIN/s: Heat shock protein Hsp20 (InterPro:IPR002068), HSP20-like chaperone (InterPro:IPR008978); BEST Arabidopsis thaliana protein match is: mitochondrion-localized small heat shock protein 23.6 (TAIR:AT4G25200.1); Has 3995 Blast hits to 3995 proteins in 1037 species: Archae - 138; Bacteria - 2214; Metazoa - 5; Fungi - 114; Plants - 1208; Viruses - 0; Other Eukaryotes - 316 (source: NCBI BLink).
Protein Annotations
BioGrid:20463eggNOG:COG0071eggNOG:KOG0710EMBL:AB025621
EMBL:AK229697EMBL:AY086693EMBL:BT008572EMBL:BT008645
EMBL:CP002688EnsemblPlants:AT5G51440EnsemblPlants:AT5G51440.1entrez:835218
Gene3D:2.60.40.790GeneID:835218Genevisible:Q9FGM9GO:GO:0005739
Gramene:AT5G51440.1hmmpanther:PTHR11527hmmpanther:PTHR11527:SF95HOGENOM:HOG000238886
InParanoid:Q9FGM9IntAct:Q9FGM9InterPro:IPR002068InterPro:IPR008978
InterPro:IPR031107KEGG:ath:AT5G51440KO:K13993OMA:WNAKEDE
PANTHER:PTHR11527PaxDb:Q9FGM9Pfam:PF00011Pfam:Q9FGM9
Pfscan:PS01031PhylomeDB:Q9FGM9PRIDE:Q9FGM9PRO:PR:Q9FGM9
PROSITE:PS01031ProteinModelPortal:Q9FGM9Proteomes:UP000006548RefSeq:NP_199957.1
SMR:Q9FGM9STRING:3702.AT5G51440.1SUPFAM:SSF49764TAIR:AT5G51440
UniGene:At.29679UniProt:Q9FGM9
Coordinates (TAIR10) chr5:+:20891242..20892013
Molecular Weight (calculated) 23469.90 Da
IEP (calculated) 9.60
GRAVY (calculated) -0.56
Length 210 amino acids
Sequence (TAIR10)
(BLAST)
001: MASSSALALR RLLSSSTVAV PRALRAVRPV AASSRLFNTN AARNYEDGVD RNHHSNRHVS RHGGDFFSHI LDPFTPTRSL SQMLNFMDQV SEIPLVSATR
101: GMGASGVRRG WNVKEKDDAL HLRIDMPGLS REDVKLALEQ NTLVIRGEGE TEEGEDVSGD GRRFTSRIEL PEKVYKTDEI KAEMKNGVLK VVIPKIKEDE
201: RNNIRHINVD
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)