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AT5G12020.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : 17.6 kDa class II heat shock protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
17.6 kDa class II heat shock protein (HSP17.6II); CONTAINS InterPro DOMAIN/s: Heat shock protein Hsp20 (InterPro:IPR002068), HSP20-like chaperone (InterPro:IPR008978); BEST Arabidopsis thaliana protein match is: heat shock protein 17.6A (TAIR:AT5G12030.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0071eggNOG:KOG0710EMBL:AK118853EMBL:AL163812
EMBL:AY086235EMBL:CP002688EMBL:X63443EMBL:Z46682
EnsemblPlants:AT5G12020EnsemblPlants:AT5G12020.1entrez:831075Gene3D:2.60.40.790
GeneID:831075Genevisible:P29830GO:GO:0005737GO:GO:0009408
Gramene:AT5G12020.1hmmpanther:PTHR11527hmmpanther:PTHR11527:SF93HOGENOM:HOG000251751
InParanoid:P29830InterPro:IPR002068InterPro:IPR008978InterPro:IPR031107
KEGG:ath:AT5G12020KO:K13993OMA:DYYVRERPANTHER:PTHR11527
PaxDb:P29830Pfam:P29830Pfam:PF00011Pfscan:PS01031
PhylomeDB:P29830PIR:S20871PRIDE:P29830PRO:PR:P29830
PROSITE:PS01031ProteinModelPortal:P29830Proteomes:UP000006548RefSeq:NP_196763.1
SMR:P29830STRING:3702.AT5G12020.1SUPFAM:SSF49764TAIR:AT5G12020
tair10-symbols:HSP17.6IIUniGene:At.20324UniProt:P29830
Coordinates (TAIR10) chr5:-:3882409..3882876
Molecular Weight (calculated) 17624.30 Da
IEP (calculated) 6.80
GRAVY (calculated) -0.62
Length 155 amino acids
Sequence (TAIR10)
(BLAST)
001: MDLGRFPIIS ILEDMLEVPE DHNNEKTRNN PSRVYMRDAK AMAATPADVI EHPNAYAFVV DMPGIKGDEI KVQVENDNVL VVSGERQREN KENEGVKYVR
101: MERRMGKFMR KFQLPENADL DKISAVCHDG VLKVTVQKLP PPEPKKPKTI QVQVA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)