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AT2G29500.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:30961429 (2019): nucleus
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:21988472 (2012): plant-type vacuole plant-type vacuole membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : HSP20-like chaperones superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
HSP20-like chaperones superfamily protein; CONTAINS InterPro DOMAIN/s: Heat shock protein Hsp20 (InterPro:IPR002068), HSP20-like chaperone (InterPro:IPR008978); BEST Arabidopsis thaliana protein match is: HSP20-like chaperones superfamily protein (TAIR:AT1G07400.1); Has 6873 Blast hits to 6873 proteins in 1575 species: Archae - 184; Bacteria - 4083; Metazoa - 80; Fungi - 309; Plants - 1622; Viruses - 0; Other Eukaryotes - 595 (source: NCBI BLink).
Protein Annotations
BioGrid:2849eggNOG:COG0071eggNOG:KOG0710EMBL:AC004561
EMBL:AK175165EMBL:AK175273EMBL:AK176799EMBL:AK176888
EMBL:AK176896EMBL:AK220676EMBL:AK221376EMBL:AY086565
EMBL:BT024692EMBL:CP002685EnsemblPlants:AT2G29500EnsemblPlants:AT2G29500.1
entrez:817499Gene3D:2.60.40.790GeneID:817499Genevisible:Q9ZW31
GO:GO:0005737GO:GO:0006979GO:GO:0009408GO:GO:0009644
GO:GO:0042542Gramene:AT2G29500.1hmmpanther:PTHR11527hmmpanther:PTHR11527:SF158
HOGENOM:HOG000251751InParanoid:Q9ZW31IntAct:Q9ZW31InterPro:IPR002068
InterPro:IPR008978InterPro:IPR031107KEGG:ath:AT2G29500KO:K13993
MINT:MINT-8375237OMA:DAHAGANPANTHER:PTHR11527PaxDb:Q9ZW31
Pfam:PF00011Pfam:Q9ZW31Pfscan:PS01031PhylomeDB:Q9ZW31
PIR:B84697PRIDE:Q9ZW31PRO:PR:Q9ZW31PROSITE:PS01031
ProteinModelPortal:Q9ZW31Proteomes:UP000006548RefSeq:NP_180511.1SMR:Q9ZW31
STRING:3702.AT2G29500.1SUPFAM:SSF49764TAIR:AT2G29500UniGene:At.38471
UniProt:Q9ZW31
Coordinates (TAIR10) chr2:-:12633279..12633740
Molecular Weight (calculated) 17563.70 Da
IEP (calculated) 6.82
GRAVY (calculated) -0.72
Length 153 amino acids
Sequence (TAIR10)
(BLAST)
001: MSMIPSFFNN NRRSNIFDPF SLDVWDPFKE LTSSSLSREN SAIVNARVDW RETPEAHVFK ADLPGLKKEE VKVEIEEDSV LKISGERHVE KEDKNDTWHR
101: VERSSGQFTR RFRLPENVKM DQVKAAMENG VLTVTVPKAE TKKADVKSIQ ISG
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)