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AT3G46230.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:30961429 (2019): nucleus
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : heat shock protein 17.4
Curator
Summary (TAIR10)
member of the class I small heat-shock protein (sHSP) family, which accounts for the majority of sHSPs in maturing seeds
Computational
Description (TAIR10)
heat shock protein 17.4 (HSP17.4); INVOLVED IN: response to heat; LOCATED IN: cellular_component unknown; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: M germinated pollen stage, LP.04 four leaves visible, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Heat shock protein Hsp20 (InterPro:IPR002068), HSP20-like chaperone (InterPro:IPR008978); BEST Arabidopsis thaliana protein match is: HSP20-like chaperones superfamily protein (TAIR:AT1G53540.1); Has 7056 Blast hits to 7055 proteins in 1590 species: Archae - 177; Bacteria - 4281; Metazoa - 88; Fungi - 291; Plants - 1609; Viruses - 0; Other Eukaryotes - 610 (source: NCBI BLink).
Protein Annotations
BioGrid:9088eggNOG:COG0071eggNOG:KOG0710EMBL:AF410266
EMBL:AL355775EMBL:AY143803EMBL:CP002686EMBL:X17293
EnsemblPlants:AT3G46230EnsemblPlants:AT3G46230.1entrez:823768Gene3D:2.60.40.790
GeneID:823768Genevisible:P19036GO:GO:0005737GO:GO:0009408
Gramene:AT3G46230.1hmmpanther:PTHR11527hmmpanther:PTHR11527:SF152HOGENOM:HOG000251751
InParanoid:P19036IntAct:P19036InterPro:IPR002068InterPro:IPR008978
InterPro:IPR031107KEGG:ath:AT3G46230KO:K13993OMA:NTETEHI
PANTHER:PTHR11527PaxDb:P19036Pfam:P19036Pfam:PF00011
Pfscan:PS01031PhylomeDB:P19036PIR:JQ0351PIR:T49264
PRIDE:P19036PRO:PR:P19036PROSITE:PS01031ProteinModelPortal:P19036
Proteomes:UP000006548RefSeq:NP_190209.1SMR:P19036STRING:3702.AT3G46230.1
SUPFAM:SSF49764TAIR:AT3G46230tair10-symbols:ATHSP17.4tair10-symbols:HSP17.4
UniGene:At.1484UniGene:At.70182UniProt:P19036
Coordinates (TAIR10) chr3:-:16984263..16984733
Molecular Weight (calculated) 17440.50 Da
IEP (calculated) 4.94
GRAVY (calculated) -0.57
Length 156 amino acids
Sequence (TAIR10)
(BLAST)
001: MSLVPSFFGG RRTNVFDPFS LDVWDPFEGF LTPGLTNAPA KDVAAFTNAK VDWRETPEAH VFKADVPGLK KEEVKVEVED GNILQISGER SSENEEKSDT
101: WHRVERSSGK FMRRFRLPEN AKVEEVKASM ENGVLSVTVP KVQESKPEVK SVDISG
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)