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AT1G52560.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
mitochondrion 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
FP Images

Arabidopsis cell culture (mitochondrial marker)

At1g52560-GFP
(full-length)
mitochondrial marker-RFPoverlay

Images by Sandra Tanz
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : HSP20-like chaperones superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
HSP20-like chaperones superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to high light intensity, response to hydrogen peroxide, response to heat; LOCATED IN: mitochondrion; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Heat shock protein Hsp20 (InterPro:IPR002068), HSP20-like chaperone (InterPro:IPR008978); BEST Arabidopsis thaliana protein match is: heat shock protein 21 (TAIR:AT4G27670.1); Has 5968 Blast hits to 5968 proteins in 1459 species: Archae - 181; Bacteria - 3502; Metazoa - 12; Fungi - 193; Plants - 1259; Viruses - 2; Other Eukaryotes - 819 (source: NCBI BLink).
Protein Annotations
BioGrid:26912eggNOG:COG0071eggNOG:KOG0710EMBL:AC008016
EMBL:BT010839EMBL:BT011308EMBL:CP002684EnsemblPlants:AT1G52560
EnsemblPlants:AT1G52560.1entrez:841687Gene3D:2.60.40.790GeneID:841687
Genevisible:Q9SSQ8GO:GO:0005739GO:GO:0009408GO:GO:0009644
GO:GO:0042542hmmpanther:PTHR11527hmmpanther:PTHR11527:SF173HOGENOM:HOG000238886
InParanoid:Q9SSQ8IntAct:Q9SSQ8InterPro:IPR002068InterPro:IPR008978
InterPro:IPR031107KEGG:ath:AT1G52560KO:K13993OMA:WRNTDDH
PANTHER:PTHR11527PaxDb:Q9SSQ8Pfam:PF00011Pfam:Q9SSQ8
Pfscan:PS01031PhylomeDB:Q9SSQ8PIR:C96566PRIDE:Q9SSQ8
PRO:PR:Q9SSQ8PROSITE:PS01031ProteinModelPortal:Q9SSQ8Proteomes:UP000006548
RefSeq:NP_001117476.1RefSeq:NP_175665.1SMR:Q9SSQ8STRING:3702.AT1G52560.1
SUPFAM:SSF49764TAIR:AT1G52560UniGene:At.37577UniProt:Q9SSQ8
Coordinates (TAIR10) chr1:-:19574783..19575766
Molecular Weight (calculated) 26546.40 Da
IEP (calculated) 7.50
GRAVY (calculated) -0.87
Length 232 amino acids
Sequence (TAIR10)
(BLAST)
001: MALARLALRN LQQKLSPSLM GQSCERGLVG NRHNPMKLNR FMATSAGEQE DKMNTEVSVS EKKSPRQNFP RRRGRKSLWR NTDDHGYFTP TLNEFFPPTI
101: GNTLIQATEN MNRIFDNFNV NPFQLMGQVK EQDDCYKLRY EVPGLTKEDV KITVNDGILT IKGDHKAEEE KGSPEEDEYW SSKSYGYYNT SLSLPDDAKV
201: EDIKAELKNG VLNLVIPRTE KPKKNVQEIS VE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)