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AT5G01550.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : lectin receptor kinase a4.1
Curator
Summary (TAIR10)
Encodes LecRKA4.2, a member of the lectin receptor kinase subfamily A4 (LecRKA4.1 At5g01540; LecRKA4.2 At5g01550; LecRKA4.3 At5g01560). Together with other members of the subfamily, functions redundantly in the negative regulation of ABA response in seed germination.
Computational
Description (TAIR10)
lectin receptor kinase a4.1 (LECRKA4.2); FUNCTIONS IN: protein serine/threonine kinase activity, binding, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: abscisic acid mediated signaling pathway, seed germination; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Legume lectin, beta chain (InterPro:IPR001220), Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase, catalytic domain (InterPro:IPR000719), Concanavalin A-like lectin/glucanase (InterPro:IPR008985); BEST Arabidopsis thaliana protein match is: lectin receptor kinase a4.3 (TAIR:AT5G01560.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT5G01550-MONOMERBioGrid:16976EC:2.7.11.1eggNOG:COG0515
eggNOG:ENOG410IKU3EMBL:AL161946EMBL:CP002688EnsemblPlants:AT5G01550
EnsemblPlants:AT5G01550.1entrez:831700Gene3D:2.60.120.200GeneID:831700
Genevisible:Q9M020GO:GO:0004674GO:GO:0005524GO:GO:0005886
GO:GO:0009738GO:GO:0009845GO:GO:0016021GO:GO:0030246
Gramene:AT5G01550.1hmmpanther:PTHR27007hmmpanther:PTHR27007:SF63HOGENOM:HOG000116555
InParanoid:Q9M020InterPro:IPR000719InterPro:IPR001220InterPro:IPR008271
InterPro:IPR011009InterPro:IPR013320InterPro:IPR017441iPTMnet:Q9M020
KEGG:ath:AT5G01550OMA:RELYMATPaxDb:Q9M020Pfam:PF00069
Pfam:PF00139Pfam:Q9M020Pfscan:PS50011PhylomeDB:Q9M020
PIR:T48176PRIDE:Q9M020PRO:PR:Q9M020PROSITE:PS00107
PROSITE:PS00108PROSITE:PS50011ProteinModelPortal:Q9M020Proteomes:UP000006548
RefSeq:NP_195775.1scanprosite:PS00107scanprosite:PS00108SMART:SM00220
SMR:Q9M020STRING:3702.AT5G01550.1SUPFAM:SSF49899SUPFAM:SSF56112
TAIR:AT5G01550tair10-symbols:LECRKA4.2TMHMM:TMhelixUniGene:At.49414
UniProt:Q9M020
Coordinates (TAIR10) chr5:-:214517..216583
Molecular Weight (calculated) 75989.00 Da
IEP (calculated) 6.97
GRAVY (calculated) -0.23
Length 688 amino acids
Sequence (TAIR10)
(BLAST)
001: MLVLFLLLTI PTRAQRTTTE TPKTEFIFRG FSGNQSNIVT TGAATIKLDG LLRLTDRNSN VTGTSFYHKP VRLLETNTSS TNSTIRSFST SFVFVIIPTS
101: SSNGGFGFTF TLSPTPDRTG AESAQYLGLL NKANDGNSTN HVFAVEFDTV QGFKDGADRT GNHIGLNFNS LTSDVQEPVV YYDNEDPNRK EDFPLQSGDP
201: IRAILDYDGP TQTLNLTVYP ANLKSRPVRP LISRPVPKLS QIVQEEMYVG FTAATGRDQS SAHYVMGWSF SSGGDLLTED TLDLLELPRP PPNTAKKRGY
301: NSQVLALIVA LSGVTVILLA LLFFFVMYKK RLQQGEVLED WEINHPHRLR YKDLYAATDG FKENRIVGTG GFGTVFRGNL SSPSSDQIAV KKITPNSMQG
401: VREFIAEIES LGRLRHKNLV NLQGWCKQKN DLLLIYDYIP NGSLDSLLYS RPRQSGVVLS WNARFKIAKG IASGLLYLHE EWEKVVIHRD IKPSNVLIED
501: DMNPRLGDFG LARLYERGSQ SNTTVVVGTI GYMAPELARN GKSSSASDVF AFGVLLLEIV SGRRPTDSGT FFLADWVMEL HARGEILHAV DPRLGFGYDG
601: VEARLALVVG LLCCHQRPTS RPSMRTVLRY LNGDDDVPEI DNDWGYSDSS RSDLGSNFEG YVSSDRASSS VPSFSVTRVS SSSVISGR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)