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AT2G35980.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family
Curator
Summary (TAIR10)
Encodes a protein whose sequence is similar to tobacco hairpin-induced gene (HIN1) and Arabidopsis non-race specific disease resistance gene (NDR1). Expression of this gene is induced by cucumber mosaic virus, spermine and during senescence. The gene product is localized to the chloroplast.
Computational
Description (TAIR10)
YELLOW-LEAF-SPECIFIC GENE 9 (YLS9); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: defense response to virus, leaf senescence, response to other organism; LOCATED IN: chloroplast; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis, 4 leaf senescence stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Late embryogenesis abundant protein, group 2 (InterPro:IPR004864); BEST Arabidopsis thaliana protein match is: NDR1/HIN1-like 2 (TAIR:AT3G11650.1); Has 1046 Blast hits to 1046 proteins in 28 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1046; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IXCVeggNOG:ENOG410YGQVEMBL:AB047812EMBL:AC007017
EMBL:AY086633EMBL:BT002875EMBL:BT004400EMBL:CP002685
EnsemblPlants:AT2G35980EnsemblPlants:AT2G35980.1entrez:818171GeneID:818171
Genevisible:Q9SJ52GO:GO:0004871GO:GO:0007165GO:GO:0009506
GO:GO:0009507GO:GO:0010150GO:GO:0046658GO:GO:0051607
GO:GO:0051707Gramene:AT2G35980.1hmmpanther:PTHR31415hmmpanther:PTHR31415:SF4
HOGENOM:HOG000238502InParanoid:Q9SJ52InterPro:IPR004864iPTMnet:Q9SJ52
KEGG:ath:AT2G35980OMA:IVRPRAIPaxDb:Q9SJ52Pfam:PF03168
Pfam:Q9SJ52PhylomeDB:Q9SJ52PIR:D84775PRIDE:Q9SJ52
PRO:PR:Q9SJ52ProteinModelPortal:Q9SJ52Proteomes:UP000006548RefSeq:NP_181142.1
STRING:3702.AT2G35980.1SwissPalm:Q9SJ52TAIR:AT2G35980tair10-symbols:ATNHL10
tair10-symbols:NHL10tair10-symbols:YLS9TMHMM:TMhelixUniGene:At.25508
UniProt:Q9SJ52
Coordinates (TAIR10) chr2:+:15110635..15111318
Molecular Weight (calculated) 25660.30 Da
IEP (calculated) 10.39
GRAVY (calculated) -0.07
Length 227 amino acids
Sequence (TAIR10)
(BLAST)
001: MAAEQPLNGA FYGPSVPPPA PKGYYRRGHG RGCGCCLLSL FVKVIISLIV ILGVAALIFW LIVRPRAIKF HVTDASLTRF DHTSPDNILR YNLALTVPVR
101: NPNKRIGLYY DRIEAHAYYE GKRFSTITLT PFYQGHKNTT VLTPTFQGQN LVIFNAGQSR TLNAERISGV YNIEIKFRLR VRFKLGDLKF RRIKPKVDCD
201: DLRLPLSTSN GTTTTSTVFP IKCDFDF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)