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AT3G22600.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 0.996
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein; FUNCTIONS IN: lipid binding; INVOLVED IN: lipid transport; LOCATED IN: anchored to membrane; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Bifunctional inhibitor/plant lipid transfer protein/seed storage (InterPro:IPR016140), Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (InterPro:IPR003612), Plant lipid transfer protein/Par allergen (InterPro:IPR000528), Plant lipid transfer protein/hydrophobic protein, helical domain (InterPro:IPR013770); BEST Arabidopsis thaliana protein match is: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (TAIR:AT4G14815.1); Has 1019 Blast hits to 1015 proteins in 49 species: Archae - 0; Bacteria - 4; Metazoa - 1; Fungi - 0; Plants - 1010; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J1CHeggNOG:ENOG410Z3HCEMBL:AB246327EMBL:AP000731
EMBL:AY045650EMBL:AY079122EMBL:CP002686EnsemblPlants:AT3G22600
EnsemblPlants:AT3G22600.1entrez:821832GeneID:821832GO:GO:0006869
GO:GO:0008233GO:GO:0008289GO:GO:0031225Gramene:AT3G22600.1
hmmpanther:PTHR33044hmmpanther:PTHR33044:SF23HOGENOM:HOG000240487InterPro:IPR000528
InterPro:IPR016140KEGG:ath:AT3G22600OMA:PDVSNCKPfam:PF14368
PhylomeDB:Q9LJ86PRINTS:PR00382Proteomes:UP000006548RefSeq:NP_566712.1
SMART:SM00499SMR:Q9LJ86STRING:3702.AT3G22600.1SUPFAM:SSF47699
TAIR:AT3G22600UniGene:At.20064UniProt:Q9LJ86
Coordinates (TAIR10) chr3:-:8006711..8007397
Molecular Weight (calculated) 17306.50 Da
IEP (calculated) 4.80
GRAVY (calculated) 0.04
Length 170 amino acids
Sequence (TAIR10)
(BLAST)
001: MKMEMGLVFL TVFMAVMSST MVSAQSSCTN ALISMSPCLN YITGNSTSPN QQCCNQLSRV VQSSPDCLCQ VLNGGGSQLG INVNQTQALG LPRACNVQTP
101: PVSRCNTGGG GGGSTSDSPA ESPNSSGPGN GSKTVPVGEG DGPPSSDGSS IKFSFPLIAF FSAVSYMAIF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)