AT1G22200.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:endoplasmic reticulum 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Endoplasmic reticulum vesicle transporter protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Endoplasmic reticulum vesicle transporter protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1692 (InterPro:IPR012936); BEST Arabidopsis thaliana protein match is: Endoplasmic reticulum vesicle transporter protein (TAIR:AT1G36050.2); Has 1257 Blast hits to 1087 proteins in 204 species: Archae - 0; Bacteria - 0; Metazoa - 432; Fungi - 284; Plants - 278; Viruses - 0; Other Eukaryotes - 263 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:7837857..7840602 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 43800.10 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.61 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.29 | ||||||||||||||||||||||||||||||||
| Length | 386 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MVGVMNRLRN LDAYPKINED FYRRTLSGGV ITLASSIVML ILFFSELQLY IHPVTETQLR VDTSRGEKLR INFDVTFPAL QCSIISLDSM DISGERHLDV 101: RHDIIKRRLD SSGNVIEAKQ DGIGHTKIEK PLQKHGGRLE HNETYCGSCF GAEASDDACC NSCEEVREAY RKKGWALSDP ESIDQCKREG FVQKVKDEEG 201: EGCNVHGFLE VNKVAGNFHF IPGQSFHQSG FQFHDMLLFQ QGNYNISHKV NRLAFGDFFP GVVNPLDGVQ WNQGKQSGVY QYFIKVVPSI YTDVHQNTIQ 301: SNQFSVTEHF QNMEAGRMQS PPGVFFYYDL SPIKVIFEEQ HVEFLHFLTN VCAIVGGIFT VSGIVDSFIY HGQRAIKKKM EIGKFN |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)