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AT5G38830.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31520498 (2020): mitochondrion
  • PMID:30394608 (2019): plastid
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:21166475 (2011): cytosol
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Cysteinyl-tRNA synthetase, class Ia family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Cysteinyl-tRNA synthetase, class Ia family protein; FUNCTIONS IN: cysteine-tRNA ligase activity, nucleotide binding, ATP binding; INVOLVED IN: response to cadmium ion, cysteinyl-tRNA aminoacylation; LOCATED IN: cytoplasm; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Cysteinyl-tRNA synthetase, class Ia (InterPro:IPR002308), Cysteinyl-tRNA synthetase, class Ia, N-terminal (InterPro:IPR015803), Cysteinyl-tRNA synthetase, class Ia, C-terminal (InterPro:IPR015804); BEST Arabidopsis thaliana protein match is: Cysteinyl-tRNA synthetase, class Ia family protein (TAIR:AT3G56300.1); Has 11267 Blast hits to 10945 proteins in 2873 species: Archae - 213; Bacteria - 6070; Metazoa - 419; Fungi - 280; Plants - 139; Viruses - 3; Other Eukaryotes - 4143 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT5G38830-MONOMEREC:6.1.1.16eggNOG:COG0215eggNOG:KOG2007
EMBL:AB009048EMBL:BT033092EMBL:CP002688EnsemblPlants:AT5G38830
EnsemblPlants:AT5G38830.1entrez:833874Gene3D:3.40.50.620GeneID:833874
Genevisible:B3LFA4GO:GO:0004817GO:GO:0005524GO:GO:0005829
GO:GO:0006423GO:GO:0046686GO:GO:0046872Gramene:AT5G38830.1
gramene_pathway:6.1.1.16gramene_pathway:TRNA-CHARGING-PWYHAMAP:MF_00041hmmpanther:PTHR10890
hmmpanther:PTHR10890:SF10HOGENOM:HOG000245250InParanoid:B3LFA4InterPro:IPR009080
InterPro:IPR014729InterPro:IPR015803InterPro:IPR024909InterPro:IPR032678
iPTMnet:B3LFA4KEGG:00970+6.1.1.16KEGG:ath:AT5G38830KO:K01883
OMA:DEHTVENPANTHER:PTHR10890PaxDb:B3LFA4Pfam:PF01406
PhylomeDB:B3LFA4PRIDE:B3LFA4PRINTS:PR00983PRO:PR:B3LFA4
ProteinModelPortal:B3LFA4Proteomes:UP000006548RefSeq:NP_198699.1SMR:B3LFA4
STRING:3702.AT5G38830.1SUPFAM:SSF47323SUPFAM:SSF52374TAIR:AT5G38830
TIGRfam:TIGR00435TIGRFAMs:TIGR00435UniGene:At.30380UniProt:B3LFA4
Coordinates (TAIR10) chr5:-:15545764..15548094
Molecular Weight (calculated) 57845.10 Da
IEP (calculated) 6.28
GRAVY (calculated) -0.45
Length 511 amino acids
Sequence (TAIR10)
(BLAST)
001: MEAEKMELKL YNTMTQQKEV LIPITPGKIG LYVCGITAYD FSHIGHARAA VSFDVLYRYL KHLDYDVTFV RNFTDVDDKI IDRANKNGED PLDLSNRFCD
101: EYLVDMGALQ CLPPTHQPRV SEHMDNIIKM IEKIIEKDCG YVVEGDVFFS VDKSPNYGKL SGQLLEHTRA GERVAVDSRK RNPADFALWK AAKPDEPSWE
201: SPWGPGRPGW HIECSAMSVH YLSPKFDIHG GGADLKFPHH ENEIAQTCAA CEDSGVNYWL HNGHVTINNE KMAKSKHNFK TIREITASYH PLALRHFLMS
301: AQYRSPLSFT ASQLESSSEA LYYVYQTLQD LDEGLSPYQD ALSEDGGKSE QTAEGKDIIK KLKTEFESKM LDDLNTAHIL TGAYQDALKF INASLSKLKK
401: MQKKQRMSML VSLVEIEKAA REVLDVLGLL TTLSYAEILK EMKLKTLIRA EIGEEGISQL IEERITARKN KDFAKSDEIR EKLTRKGIAL MDIGKETVWR
501: PCFPSQADSS T
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)