AT5G38830.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:cytosol 1.000 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : Cysteinyl-tRNA synthetase, class Ia family protein | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
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Computational Description (TAIR10) |
Cysteinyl-tRNA synthetase, class Ia family protein; FUNCTIONS IN: cysteine-tRNA ligase activity, nucleotide binding, ATP binding; INVOLVED IN: response to cadmium ion, cysteinyl-tRNA aminoacylation; LOCATED IN: cytoplasm; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Cysteinyl-tRNA synthetase, class Ia (InterPro:IPR002308), Cysteinyl-tRNA synthetase, class Ia, N-terminal (InterPro:IPR015803), Cysteinyl-tRNA synthetase, class Ia, C-terminal (InterPro:IPR015804); BEST Arabidopsis thaliana protein match is: Cysteinyl-tRNA synthetase, class Ia family protein (TAIR:AT3G56300.1); Has 11267 Blast hits to 10945 proteins in 2873 species: Archae - 213; Bacteria - 6070; Metazoa - 419; Fungi - 280; Plants - 139; Viruses - 3; Other Eukaryotes - 4143 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr5:-:15545764..15548094 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 57845.10 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 6.28 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.45 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Length | 511 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MEAEKMELKL YNTMTQQKEV LIPITPGKIG LYVCGITAYD FSHIGHARAA VSFDVLYRYL KHLDYDVTFV RNFTDVDDKI IDRANKNGED PLDLSNRFCD 101: EYLVDMGALQ CLPPTHQPRV SEHMDNIIKM IEKIIEKDCG YVVEGDVFFS VDKSPNYGKL SGQLLEHTRA GERVAVDSRK RNPADFALWK AAKPDEPSWE 201: SPWGPGRPGW HIECSAMSVH YLSPKFDIHG GGADLKFPHH ENEIAQTCAA CEDSGVNYWL HNGHVTINNE KMAKSKHNFK TIREITASYH PLALRHFLMS 301: AQYRSPLSFT ASQLESSSEA LYYVYQTLQD LDEGLSPYQD ALSEDGGKSE QTAEGKDIIK KLKTEFESKM LDDLNTAHIL TGAYQDALKF INASLSKLKK 401: MQKKQRMSML VSLVEIEKAA REVLDVLGLL TTLSYAEILK EMKLKTLIRA EIGEEGISQL IEERITARKN KDFAKSDEIR EKLTRKGIAL MDIGKETVWR 501: PCFPSQADSS T |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)