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AT5G09680.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 1.000
ASURE: cytosol
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : reduced lateral root formation
Curator
Summary (TAIR10)
Encodes RLF (Reduced Lateral root Formation). Involved in lateral root formation. Contains a cytochrome b5-like heme/steroid binding domain. Localized in the cytosol.
Computational
Description (TAIR10)
reduced lateral root formation (RLF); FUNCTIONS IN: heme binding; INVOLVED IN: lateral root formation; LOCATED IN: cytosol; EXPRESSED IN: stem, root, flower, leaf; CONTAINS InterPro DOMAIN/s: Cytochrome b5, heme-binding site (InterPro:IPR018506), Cytochrome b5 (InterPro:IPR001199); BEST Arabidopsis thaliana protein match is: cytochrome B5 isoform A (TAIR:AT1G26340.1); Has 3049 Blast hits to 3033 proteins in 420 species: Archae - 2; Bacteria - 7; Metazoa - 694; Fungi - 1150; Plants - 759; Viruses - 0; Other Eukaryotes - 437 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:GQT-1983-MONOMERBioCyc:ARA:GQT-1984-MONOMERBioGrid:16105eggNOG:COG5274
eggNOG:KOG0536EMBL:AB020752EMBL:AK175110EMBL:AK175645
EMBL:AL353994EMBL:BT010404EMBL:CP002688EnsemblPlants:AT5G09680
EnsemblPlants:AT5G09680.1EnsemblPlants:AT5G09680.2entrez:830827Gene3D:3.10.120.10
GeneID:830827GO:GO:0005829GO:GO:0010311GO:GO:0020037
GO:GO:0040008GO:GO:0046872Gramene:AT5G09680.1Gramene:AT5G09680.2
hmmpanther:PTHR19370hmmpanther:PTHR19370:SF68HOGENOM:HOG000012418InParanoid:Q9LXD1
IntAct:Q9LXD1InterPro:IPR001199InterPro:IPR018506iPTMnet:Q9LXD1
KEGG:ath:AT5G09680OMA:EGSMWTVPaxDb:Q9LXD1Pfam:PF00173
Pfam:Q9LXD1Pfscan:PS50255PhylomeDB:Q9LXD1PIR:T49930
PRIDE:Q9LXD1PRO:PR:Q9LXD1PROSITE:PS00191PROSITE:PS50255
ProteinModelPortal:Q9LXD1Proteomes:UP000006548RefSeq:NP_001031861.1RefSeq:NP_196530.1
scanprosite:PS00191SMART:SM01117SMR:Q9LXD1STRING:3702.AT5G09680.1
SUPFAM:SSF55856TAIR:AT5G09680tair10-symbols:RLFUniGene:At.32475
UniProt:Q9LXD1
Coordinates (TAIR10) chr5:-:2999362..3000185
Molecular Weight (calculated) 23698.30 Da
IEP (calculated) 9.30
GRAVY (calculated) -0.68
Length 211 amino acids
Sequence (TAIR10)
(BLAST)
001: MDTSRDDDFT FSKVSPPDSE VKDLASDVGS ITLKDGLDQQ KSNGLIWKDK SLPPKEETIG SLSFTVTDSS SSKKQSNESS ETFKTPARKP ITRTKVPFEK
101: GYSQMDWLKL TRTHPDLAGL KGESNKRLIP MDEVKKHRTG DSMWTVLKGR VYNISPYMNF HPGGVDMLMK AVGRDGTLLF NKYHAWVNVD ILLEKCLVGV
201: LDDTKVKKQE P
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)