suba logo
AT3G27310.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26572690 (2016): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : plant UBX domain-containing protein 1
Curator
Summary (TAIR10)
encodes a protein that contains a UBX domain and regulates AtCDC48 by inhibiting its ATPase activity and by promoting the disassembly of the active hexamer. Phenotypic analysis of pux1 plants revealed that the loss of PUX1 accelerated the growth of various plant organs including roots and inflorescence shoots. AtCDC48 and SYP31 colocalize at the division plane during cytokinesis and to interact in vitro and in vivo.
Computational
Description (TAIR10)
plant UBX domain-containing protein 1 (PUX1); CONTAINS InterPro DOMAIN/s: UBX (InterPro:IPR001012); Has 392 Blast hits to 391 proteins in 121 species: Archae - 0; Bacteria - 0; Metazoa - 209; Fungi - 47; Plants - 86; Viruses - 0; Other Eukaryotes - 50 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XQQKeggNOG:KOG2699EMBL:AK175284EMBL:AP000381
EMBL:AY085053EMBL:AY572781EMBL:BT024476EMBL:CP002686
EnsemblPlants:AT3G27310EnsemblPlants:AT3G27310.1entrez:822350GeneID:822350
Genevisible:Q9LK22GO:GO:0005737GO:GO:0035265GO:GO:0043241
GO:GO:0051117Gramene:AT3G27310.1hmmpanther:PTHR23153HOGENOM:HOG000006016
InterPro:IPR001012InterPro:IPR029071iPTMnet:Q9LK22KEGG:ath:AT3G27310
KO:K15627ncoils:CoilOMA:DFYEFTPPaxDb:Q9LK22
Pfam:PF00789Pfam:Q9LK22Pfscan:PS50033PhylomeDB:Q9LK22
PRIDE:Q9LK22PRO:PR:Q9LK22PROSITE:PS50033ProteinModelPortal:Q9LK22
Proteomes:UP000006548RefSeq:NP_566815.1STRING:3702.AT3G27310.1SUPFAM:SSF54236
TAIR:AT3G27310tair10-symbols:PUX1UniGene:At.37086UniProt:Q9LK22
Coordinates (TAIR10) chr3:-:10087360..10089077
Molecular Weight (calculated) 28503.50 Da
IEP (calculated) 6.70
GRAVY (calculated) -0.71
Length 251 amino acids
Sequence (TAIR10)
(BLAST)
001: MFVDDPSLHT LKRRRLEITD SMEASSSAQA KIADMREKLG REVRVFETSS ISQRPSQVSS ADDESDDFYE FTPADFYRLL ATKKEDKSLK TRKIREAEEA
101: ARRSKLTKAV IRVRFPDNHT LEATFHPSEK IQGLIDLVKR VVAHPDVPFY LYTTPPKKQI KDFSQDFYSA GFVPGAIVYF SNDQPKDDGG SSTPYLNEEI
201: LSLKDLEAMT KAVEPVESSS EPATVDSSAV PVEHERKSTE KKTTKPKWFK M
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)