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AT5G44560.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : SNF7 family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
VPS2.2; CONTAINS InterPro DOMAIN/s: Snf7 (InterPro:IPR005024); BEST Arabidopsis thaliana protein match is: vacuolar protein sorting-associated protein 2.3 (TAIR:AT1G03950.1); Has 1712 Blast hits to 1710 proteins in 241 species: Archae - 0; Bacteria - 17; Metazoa - 794; Fungi - 317; Plants - 378; Viruses - 0; Other Eukaryotes - 206 (source: NCBI BLink).
Protein Annotations
BioGrid:19733eggNOG:COG5491eggNOG:KOG3230EMBL:AB017065
EMBL:AB024024EMBL:AK227410EMBL:BT005848EMBL:CP002688
EnsemblPlants:AT5G44560EnsemblPlants:AT5G44560.1entrez:834483GeneID:834483
Genevisible:Q0WTY4GO:GO:0000815GO:GO:0007034GO:GO:0015031
hmmpanther:PTHR10476hmmpanther:PTHR10476:SF8HOGENOM:HOG000177218InParanoid:Q0WTY4
IntAct:Q0WTY4InterPro:IPR005024iPTMnet:Q0WTY4KEGG:ath:AT5G44560
KO:K12191ncoils:CoilOMA:SIGMSARPaxDb:Q0WTY4
Pfam:PF03357Pfam:Q0WTY4PhylomeDB:Q0WTY4PRIDE:Q0WTY4
PRO:PR:Q0WTY4ProteinModelPortal:Q0WTY4Proteomes:UP000006548Reactome:R-ATH-1632852
Reactome:R-ATH-917729RefSeq:NP_001119371.1RefSeq:NP_199269.1SMR:Q0WTY4
STRING:3702.AT5G44560.1TAIR:AT5G44560tair10-symbols:VPS2.2UniGene:At.30067
UniProt:Q0WTY4
Coordinates (TAIR10) chr5:+:17946081..17948222
Molecular Weight (calculated) 24306.20 Da
IEP (calculated) 10.30
GRAVY (calculated) -0.57
Length 222 amino acids
Sequence (TAIR10)
(BLAST)
001: MNIFKKKTTP KDALRTSKRE MAVATRGIER EITSLQLEEK RLVAEIKKTA KTGNEAATKI LARQLVRLRQ QITNLQGSRA QIRGVTTHTQ ALYASTSISS
101: GMKGATKAMV AMNKQMAPTK QAKVIKDFQK QSAQLDMTIE MMSEAIDETL DKDEAEEETE DLTNQVLDEI GVGVASQLSS APKGRIATKT AAPPASTAAT
201: NKNSESSEVD ELEKRLASLR RI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)