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AT4G19003.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 0.500
nucleus 0.500
ASURE: cytosol,nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:26781341 (2016): plasma membrane
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:22215637 (2012): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : E2F/DP family winged-helix DNA-binding domain
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
VPS25; CONTAINS InterPro DOMAIN/s: ESCRT-II complex, vps25 subunit, N-terminal winged helix (InterPro:IPR014041), ESCRT-II complex, vps25 subunit, C-terminal winged helix (InterPro:IPR014040), ESCRT-II complex, vps25 subunit (InterPro:IPR008570); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
BioGrid:12930DIP:DIP-61574NDNASU:827637eggNOG:ENOG4111F6Y
eggNOG:KOG4068EMBL:AK317105EMBL:AL161549EMBL:AY065055
EMBL:AY093752EMBL:CP002687EnsemblPlants:AT4G19003EnsemblPlants:AT4G19003.1
EnsemblPlants:AT4G19003.2entrez:827637Gene3D:1.10.10.10Gene3D:1.10.10.570
GeneID:827637GO:GO:0000814GO:GO:0005198GO:GO:0042803
GO:GO:0043328Gramene:AT4G19003.1Gramene:AT4G19003.2hmmpanther:PTHR13149
hmmpanther:PTHR13149:SF0HOGENOM:HOG000191978InParanoid:Q8VZC9IntAct:Q8VZC9
InterPro:IPR008570InterPro:IPR011991InterPro:IPR014041KEGG:ath:AT4G19003
KO:K12189OMA:PPFFTIQPANTHER:PTHR13149PaxDb:Q8VZC9
Pfam:PF05871Pfam:Q8VZC9PhylomeDB:Q8VZC9PRIDE:Q8VZC9
PRO:PR:Q8VZC9ProteinModelPortal:Q8VZC9Proteomes:UP000006548Reactome:R-ATH-917729
RefSeq:NP_680720.1RefSeq:NP_974570.1SMR:Q8VZC9STRING:3702.AT4G19003.1
SUPFAM:SSF46785TAIR:AT4G19003tair10-symbols:VPS25UniGene:At.28275
UniProt:Q8VZC9
Coordinates (TAIR10) chr4:-:10407571..10408582
Molecular Weight (calculated) 20682.90 Da
IEP (calculated) 5.37
GRAVY (calculated) -0.28
Length 179 amino acids
Sequence (TAIR10)
(BLAST)
001: MQKLADFKLP QFFNYPPYFT LQPVRDTREK QIQLWKELIL DYCKSQKIFL IGVEEDFPLF SNSAIDRSLS HEARETFLSA IVGEGRAEWL DKGHRKCLIL
101: WHRIQDWADI VLQFVRDNGL EDSVMTVEEI RSGTESLGTE LQGIDRTILM RALKLLENKG KLALFKGTSA DDEGVKFSV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)