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AT1G50740.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 0.525
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Transmembrane proteins 14C
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Transmembrane proteins 14C; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0136, Transmembrane (InterPro:IPR005349); BEST Arabidopsis thaliana protein match is: Transmembrane proteins 14C (TAIR:AT3G20510.1); Has 412 Blast hits to 412 proteins in 97 species: Archae - 0; Bacteria - 35; Metazoa - 172; Fungi - 4; Plants - 187; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG4112205eggNOG:KOG4267EMBL:AC079027EMBL:AY074495
EMBL:AY087361EMBL:AY096728EMBL:CP002684EnsemblPlants:AT1G50740
EnsemblPlants:AT1G50740.1entrez:841496GeneID:841496Genevisible:Q9C6T7
GO:GO:0016021Gramene:AT1G50740.1hmmpanther:PTHR12668hmmpanther:PTHR12668:SF0
HOGENOM:HOG000211932InterPro:IPR005349KEGG:ath:AT1G50740OMA:YMESSAI
PANTHER:PTHR12668PaxDb:Q9C6T7Pfam:PF03647Pfam:Q9C6T7
PhylomeDB:Q9C6T7PIR:C96544PRO:PR:Q9C6T7ProteinModelPortal:Q9C6T7
Proteomes:UP000006548RefSeq:NP_564579.1SMR:Q9C6T7STRING:3702.AT1G50740.1
TAIR:AT1G50740TMHMM:TMhelixUniGene:At.43937UniProt:Q9C6T7
Coordinates (TAIR10) chr1:+:18807861..18808765
Molecular Weight (calculated) 12512.90 Da
IEP (calculated) 10.02
GRAVY (calculated) 0.84
Length 119 amino acids
Sequence (TAIR10)
(BLAST)
001: MHDFCFTIPY GILLIVGGFI GYLKKGSIAS LAGGAGTGLL VVLAGFISLK AFEKKKTSLL ATLLETVIAA ALTFVMGQRF LQTQKIMPAA LVAGISALMT
101: CFYVYKIATG GNHIPPKAE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)