AT1G50740.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:extracellular 0.525 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : Transmembrane proteins 14C | ||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
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Computational Description (TAIR10) |
Transmembrane proteins 14C; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0136, Transmembrane (InterPro:IPR005349); BEST Arabidopsis thaliana protein match is: Transmembrane proteins 14C (TAIR:AT3G20510.1); Has 412 Blast hits to 412 proteins in 97 species: Archae - 0; Bacteria - 35; Metazoa - 172; Fungi - 4; Plants - 187; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr1:+:18807861..18808765 | ||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 12512.90 Da | ||||||||||||||||||||||||||||||||||||
IEP (calculated) | 10.02 | ||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | 0.84 | ||||||||||||||||||||||||||||||||||||
Length | 119 amino acids | ||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MHDFCFTIPY GILLIVGGFI GYLKKGSIAS LAGGAGTGLL VVLAGFISLK AFEKKKTSLL ATLLETVIAA ALTFVMGQRF LQTQKIMPAA LVAGISALMT 101: CFYVYKIATG GNHIPPKAE |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)