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AT4G33880.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data
Description (TAIR10) protein_coding : ROOT HAIR DEFECTIVE 6-LIKE 2
Curator
Summary (TAIR10)
RSL2 was expressed concurrently with RSL4 and its expression was controlled by RHD6 and RSL1. Required for root-hair growth.
Computational
Description (TAIR10)
ROOT HAIR DEFECTIVE 6-LIKE 2 (RSL2); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: root hair initiation, response to auxin stimulus, cell growth, regulation of transcription; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT2G14760.1); Has 3067 Blast hits to 2987 proteins in 166 species: Archae - 0; Bacteria - 15; Metazoa - 165; Fungi - 32; Plants - 2687; Viruses - 0; Other Eukaryotes - 168 (source: NCBI BLink).
Protein Annotations
BioGrid:14813eggNOG:ENOG410IXZ6eggNOG:ENOG410YM1PEMBL:AF488616
EMBL:AK228110EMBL:AL031032EMBL:AL161584EMBL:BT003137
EMBL:CP002687EnsemblPlants:AT4G33880EnsemblPlants:AT4G33880.1entrez:829531
Gene3D:4.10.280.10GeneID:829531GO:GO:0001046GO:GO:0001228
GO:GO:0003700GO:GO:0005634GO:GO:0006355GO:GO:0006366
GO:GO:0009733GO:GO:0016049GO:GO:0045944GO:GO:0048766
Gramene:AT4G33880.1hmmpanther:PTHR16223hmmpanther:PTHR16223:SF9HOGENOM:HOG000240244
InParanoid:Q84WK0InterPro:IPR011598KEGG:ath:AT4G33880ncoils:Coil
OMA:EESNCADPaxDb:Q84WK0Pfam:PF00010Pfam:Q84WK0
Pfscan:PS50888PhylomeDB:Q84WK0PIR:T05216PRO:PR:Q84WK0
PROSITE:PS50888ProteinModelPortal:Q84WK0Proteomes:UP000006548RefSeq:NP_195114.2
SMART:SM00353SMR:Q84WK0STRING:3702.AT4G33880.1SUPFAM:SSF47459
TAIR:AT4G33880tair10-symbols:RSL2UniGene:At.31542UniProt:Q84WK0
Coordinates (TAIR10) chr4:-:16239566..16241052
Molecular Weight (calculated) 38772.50 Da
IEP (calculated) 4.59
GRAVY (calculated) -0.83
Length 352 amino acids
Sequence (TAIR10)
(BLAST)
001: MEAMGEWSNN LGGMYTYATE EADFMNQLLA SYDHPGTGSS SGAAASGDHQ GLYWNLGSHH NHLSLVSEAG SFCFSQESSS YSAGNSGYYT VVPPTVEENQ
101: NETMDFGMED VTINTNSYLV GEETSECDVE KYSSGKTLMP LETVVENHDD EESLLQSEIS VTTTKSLTGS KKRSRATSTD KNKRARVNKR AQKNVEMSGD
201: NNEGEEEEGE TKLKKRKNGA MMSRQNSSTT FCTEEESNCA DQDGGGEDSS SKEDDPSKAL NLNGKTRASR GAATDPQSLY ARKRRERINE RLRILQNLVP
301: NGTKVDISTM LEEAVHYVKF LQLQIKLLSS DDLWMYAPIA FNGMDIGLSS PR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)