AT5G55040.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : DNA-binding bromodomain-containing protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
DNA-binding bromodomain-containing protein; FUNCTIONS IN: DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Bromodomain, conserved site (InterPro:IPR018359), Bromodomain (InterPro:IPR001487); BEST Arabidopsis thaliana protein match is: DNA-binding bromodomain-containing protein (TAIR:AT1G20670.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:22327727..22331703 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 103420.00 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.00 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -1.07 | ||||||||||||||||||||||||||||||||||||||||
| Length | 916 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSQIARRRRK GRPSKADLAA RRSSSSPRES GYELRRGQRQ RNVRYNFDFD DYFDEEEEDE VEEEKKRQKK LKQVLKLNQS RARADPPVKS RARVRHASDY 101: EEEDEEDDEA EEEEEEVSEK RQVKKRKLNR QDEEEEEEEE KDYDVEEEEE EEEGHADSEE EDDKERKRRS ASGNQCDHSS ETTPILDKKS LELILDKLQK 201: KDIYGVYAEP VDPEELPDYH DMIEHPMDFS TVRKKLANGS YSTLEELESD VLLICSNAMQ YNSSDTVYYK QARTIQEMGK RKFEKARLKI KRAEKELKTD 301: EKVKPDSSVK KQVRQPFSRN GLEAVGSDFS SGANLASGGA SQNEPVSTQI GGHEKHSYTD VLFEGNTSLV DSLEKAEDLS SGKGLFGKCG RKLSVVEEDR 401: RATYEDSDQQ GDRSESIFTT FESEIKQFVA VGLHAEHAYG RSLARFAATL GPVAWKIASQ RIEQALPADF KFGRGWVGEY EPLPTPVLLF ETCTPKEPPK 501: KASVFSKRKS NAATKTNETL FKTPLPAKEQ QGSRPVRDGN HAFPFPASIG ALSEGSPSFV ATQVGNLKSM SQHEYRNPSQ LDFVKPQNRI PQQVELNLPP 601: PAEQTNSGSG CVLENQSFGK SDTVASYRSS SDMMRNMSST DSEHYKHQMT TNGIFPGGLR NGKVSPGVNN RMFDLSTDFA NQMSRTATSS QQPMRQQSQS 701: HEEQAQIMRN FNERARTQHN STYNHPKADA PPKISSPQSA RSEDSGNASV AAARAWMSIG AGGNNKQTFE NASNPKSSQI SAESLYNPSR EHFHQQAFKP 801: RDAEETQFHP QRNGFPFQTF VHQPVHGMMN GGYQPFQNNR PIVFPQMAAP TSDFSRFHVQ SQWRGGITPQ VQLKQRQENF NLPPDLNIGV HSPDSPAKQS 901: SGVRVDSQQP DLALQL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)