AT1G79350.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : RING/FYVE/PHD zinc finger superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
embryo defective 1135 (EMB1135); FUNCTIONS IN: DNA binding, zinc ion binding; INVOLVED IN: regulation of transcription, DNA-dependent, embryo development ending in seed dormancy; LOCATED IN: chloroplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, PHD-type, conserved site (InterPro:IPR019786), Zinc finger, PHD-type (InterPro:IPR001965), Zinc finger, LSD1-type (InterPro:IPR005735), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), Zinc finger, PHD-finger (InterPro:IPR019787); Has 4247 Blast hits to 3784 proteins in 326 species: Archae - 2; Bacteria - 520; Metazoa - 2572; Fungi - 347; Plants - 469; Viruses - 36; Other Eukaryotes - 301 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:29844829..29853215 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 143625.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.37 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.38 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 1295 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MTQSPVQPPP PLPAQPHSAA GGVIRGDVQV RCAGCRVILR VKTGVVEFSC PTCQLPQMLP PELLSRARPQ FPQSPQQPPQ PIQTLPPPIQ QQLKPLNLPR 0101: PPVPAHGIDP TKMQLPCANC QAILNVPHGL TRFSCPQCHV ELAVDVSKLN RSLTASQSHS NPPTPAAPTV PPPPPPEEVN EEAIEVEREE DEGGTAGETF 0201: MDYRPPKLSI GPPHPDPIVE TSSLSAVQPP EPTYDLKIKE ELERSKALSC LQIETLVYAC QRHLQHLADG TRAGFFVGDG AGVGKGRTIA GLIWENWKHG 0301: RRKALWISIG SDLKYDARRD LDDVGATCVG VNPLNKLPYS KLDSKNVGIK EGVVFLTYNS LIASSEKGRS RLQQLVQWCG PEFDGLLIFD ECHKAKNLVP 0401: EAGSQPTRIG QAVVDIQDKI PQARVIYCSA TGASEPRNMG YMVRLGLWGA GTSFSDFNKF LGALDKGGTG ALELVAMDMK ARGMYVCRTL SYKGAEFEIV 0501: EARLEAGMEA MYNKSAEFWA ELRIELLSAS AFLPNEKPNS SQLWRLYWSS HQRFFRHLCM SAKVPVTVRL AKKALSTNKC VVIGLQSTGE ARTEEAVNKY 0601: GLELDDFVSG PRELLLKFVE ENYPLPEQPE PLSEDDSVKE LQRKRHSASP GVSIRGRVRK MAKWKPDSDN ESDLESEADS ADDSNDSDDE FQICQICSGE 0701: DERKKLLHCS ECDKLFHPDC VVPPVIDLPS EAWICFSCKE KTEEYIQARR LYIAELQKRY EAALERKSKI IEIIRSLNLP NNPLDDIVDQ LGGPEKVAEM 0801: TGRRGMLVRA SNGKGVTYQA RNTKDITMEM VNMHEKQLFM DGKKLVAIIS EAGSAGVSLQ ADRRAVNQKR RVHLTLELPW SADRAIQQFG RTHRSNQTSA 0901: PEYRLLFTNL GGERRFASIV AKRLETLGAL TQGDRRAGPS GPSLSAYNYD SNFGKKSLMV MYRGIMEQEK LPVLPPGCSI DEPETVKEFL TKARAALVAV 1001: GIVRDSVLAN GKDVGRFSGR IIDSDMHDVG RFLNRLLGLP PDIQNRLFEL FTSILDVLVH NARIEGSFDS GIVDMKANSV ELLSTPKTVH VDQMSGASTM 1101: LFTFTLDRGV TWESASSMLE GKRRDGLGSA NDGFFESKRE WLGRRHFILA FESAASGLFK IVRPAVGESI REMSLSELKT KYRKLSSLEK ARTGWEDEYE 1201: VSSKQCMHGP KCKLGEYCTV GRRIQEVNVV GGLILPIWGT IEKALSKQAR HSHKRIRVIR IETTTDNQRI VGLSIPNAAV ETVLQDLAWV QEIDD |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)