AT4G20060.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.848 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : ARM repeat superfamily protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
EMBRYO DEFECTIVE 1895 (EMB1895); FUNCTIONS IN: binding; INVOLVED IN: embryo development ending in seed dormancy; LOCATED IN: cellular_component unknown; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-type fold (InterPro:IPR016024); Has 205 Blast hits to 155 proteins in 64 species: Archae - 0; Bacteria - 0; Metazoa - 163; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:-:10854790..10859330 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 127323.00 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.74 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.15 | ||||||||||||||||||||||||||||||||||||
| Length | 1134 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MEKVSAACAM EWSIKLEKSL RSKNSVKAVE AILETGGKLE QWSKEPESAI AVYNLFGLVP EEDKLFSNTI LLRLVDAFCV GDKLIKLAVV RVFMSMFKLS 0101: RGKNVNESAS WFLSKGRVHN HLELLTRVKN VYDKGDTESK ALALILFGCW RDFASEFAPV RYLVFSSMVS PHDLEGRSAL FAAACFCEVA DDFALVVLGM 0201: LNDMVKFPDI TPKTRLAAVR VFAKMGCSHT IANRAFKICM KLMLDSPKED NLVPFLVSLT KLASRSTHLA SELAEVIIPF LGEDKTSHAR AAVLRCLHFL 0301: IERGMCFSLA HERDIASVSS LLKQEELSSD MQVKALQIFQ KIVVYKLCMT DASELLQLIA ITENASHSQI FSSSCLAISV LVSIWTEIVR TAEKRSIEIS 0401: STSLPMQLVV LIMDRVALLG RLCSDLFRAG YAVVSEVQDL LKVLHLLVGK HSELRLLVLE KVRLFLTYIV SLNDGLRKAD GAHELLFGVI NYKDKRGVVM 0501: RSEFLASIHK FLIVFLENLE GDDNLLSEIY EKVKHITEFV SSCSFIDFHT QMIFTLLLHS PILWGFSVND DTGNSGVSLV ADIVNYGIVS LDCSNQILME 0601: RNYWPAYRAG VYAARLGAWV TSAMIFDQLK TNVQSDINCC WLKSLTYLSH AEGKFQLLLT PSDSVKLVNW LKNNGYLPEL SKDASGEFAH CLALREAYMN 0701: LQSSLGMLGN IIASSGVFCF QTWFLVLKTR VLETVLELVE CLGLLNQDLR NKNQVEEILL TGCDSLQQLP RISIQLQKLA KEFDMLATCF IDIDDSSSSI 0801: ITTISLSCSV LAFAAGIVLF LPGFSFQEAL VPFTSQSGLC SRLVEDLVRR LWKVDPNVCE KLNILVNTNE SLNCFHLQSR NQVLRVCGKV KMLLSICRDA 0901: LSCTYGLQNQ SMSMHKEEIM SEITKSCRHL LSQAIMKWMQ IPFGIPKYFF NIRPCVGAEL FALSSESSKR IPDTVSVEQG FQLSLDLCLQ LKNIKQRQVP 1001: VRLNKLYCLL YTKLAYHSPT QHGENNRNQM SYSPWRDEDL IEMSNKLFHH AIKSGKKPDV SGRFDWAKSG VSTVVQFEPN ERGQGFSSCL LDVSRFPVGS 1101: YQIKWLSCCV DQHGSYWNLL PLNGKPVFTV KKAS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)