AT3G20490.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : | ||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
unknown protein; Has 754 Blast hits to 165 proteins in 64 species: Archae - 0; Bacteria - 48; Metazoa - 26; Fungi - 25; Plants - 36; Viruses - 0; Other Eukaryotes - 619 (source: NCBI BLink). | ||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:7154178..7156382 | ||||||||||||||||||||
| Molecular Weight (calculated) | 50334.90 Da | ||||||||||||||||||||
| IEP (calculated) | 9.82 | ||||||||||||||||||||
| GRAVY (calculated) | -0.93 | ||||||||||||||||||||
| Length | 458 amino acids | ||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MDSIEPPSFS LGFDLDAASD LQSEIHQNPS STGDQLIGDG DNEPELGLTV SDSDRELEPD FTSPVLKRLR RGINPNKCSV KDDRSVAVED RDDDIEEFSS 101: PEDFPTDAPA STRSHFSSCS SRVPLHGSGV LSNQPSISRG KRKQSDVQAS AASGISSVAS LFQMSSRSPL RRFQLLDSDS EDDHPSTSRD LSGATKKHDS 201: FSKNQPSIAS KPKRKEPGSI PCIKDLWKDF SPASSKIQTP AFDDVCQDYF ISIKTTSTAQ KQSSAVASSS NSGNHNLTGF QQTELFHDFS HPSPPSHRFF 301: LHSDPRIRNL ARQRLPNFFP LGIVNDRESQ REVFLVDYMN QFGSKGSSKA GDSSSKSCRR GKTKSKVSKS QESAHNSEGW LNPKTRAAAP KDAGKRRVSA 401: DSGSAGHWFT SPEGRKVYIS KSGQEFSGQS AYRCYKKENG VGFKKSRKKR QPKKKAKN |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)