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AT5G14960.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : DP-E2F-like 2
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
DP-E2F-like 2 (DEL2); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), Transcription factor E2F/dimerisation partner (TDP) (InterPro:IPR003316), E2F Family (InterPro:IPR015633); BEST Arabidopsis thaliana protein match is: DP-E2F-like protein 3 (TAIR:AT3G01330.1); Has 936 Blast hits to 860 proteins in 115 species: Archae - 0; Bacteria - 0; Metazoa - 583; Fungi - 5; Plants - 220; Viruses - 0; Other Eukaryotes - 128 (source: NCBI BLink).
Protein Annotations
BioGrid:16625DNASU:831348eggNOG:ENOG4111IGYeggNOG:KOG2578
EMBL:AB074531EMBL:AB493750EMBL:AJ417835EMBL:AL391146
EMBL:CP002688EnsemblPlants:AT5G14960EnsemblPlants:AT5G14960.1entrez:831348
Gene3D:1.10.10.10GeneID:831348Genevisible:Q9LFQ9GO:GO:0003677
GO:GO:0003700GO:GO:0005634GO:GO:0005667GO:GO:0006351
GO:GO:0007049GO:GO:0008284GO:GO:0009733Gramene:AT5G14960.1
hmmpanther:PTHR12081hmmpanther:PTHR12081:SF7HOGENOM:HOG000083291InParanoid:Q9LFQ9
InterPro:IPR003316InterPro:IPR011991InterPro:IPR015633KEGG:ath:AT5G14960
OMA:VIKQEQCPANTHER:PTHR12081PaxDb:Q9LFQ9Pfam:PF02319
Pfam:Q9LFQ9PhylomeDB:Q9LFQ9PIR:T51441PRIDE:Q9LFQ9
PRO:PR:Q9LFQ9ProteinModelPortal:Q9LFQ9Proteomes:UP000006548RefSeq:NP_197000.1
SMART:SM01372SMR:Q9LFQ9STRING:3702.AT5G14960.1SUPFAM:SSF46785
TAIR:AT5G14960tair10-symbols:DEL2tair10-symbols:E2FDtair10-symbols:E2L1
UniGene:At.31860UniProt:Q9LFQ9
Coordinates (TAIR10) chr5:+:4843966..4846373
Molecular Weight (calculated) 40555.10 Da
IEP (calculated) 8.64
GRAVY (calculated) -0.58
Length 359 amino acids
Sequence (TAIR10)
(BLAST)
001: MDSLALAPQV YSRKDKSLGV LVANFLTLYN RPDVDLFGLD DAAAKLGVER RRIYDVVNIL ESIGLVARSG KNQYSWKGFG AVPRALSELK EEGMKEKFAI
101: VPFVAKSEMV VYEKEGEESF MLSPDDQEFS PSPRPDNRKE RTLWLLAQNF VKLFLCSDDD LVTFDSATKA LLNESQDMNM RKKVRRLYDI ANVFSSMKLI
201: EKTHVPETKK PAYRWLGSKT IFENRFIDGS ASLCDRNVPK KRAFGTELTN VNAKRNKSGC SKEDSKRNGN QNTSIVIKQE QCDDVKPDVK NFASGSSTPA
301: GTSESNDMGN NIRPRGRLGV IEALSTLYQP SYCNPELLGL FAHYNETFRS YQEEFGREK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)