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AT1G03960.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:22522809 (2012): cytosol cytosolic ribosomes
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Calcium-binding EF hand family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Calcium-binding EF hand family protein; FUNCTIONS IN: calcium ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: EF-Hand 1, calcium-binding site (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-hand-like domain (InterPro:IPR011992); BEST Arabidopsis thaliana protein match is: Calcium-binding EF-hand family protein (TAIR:AT5G44090.1); Has 707 Blast hits to 703 proteins in 126 species: Archae - 0; Bacteria - 0; Metazoa - 370; Fungi - 0; Plants - 160; Viruses - 0; Other Eukaryotes - 177 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XRBKeggNOG:KOG2562EMBL:AC003027EMBL:BT004045
EMBL:BT004945EMBL:CP002684EnsemblPlants:AT1G03960EnsemblPlants:AT1G03960.1
entrez:839361Gene3D:1.10.238.10GeneID:839361Genevisible:Q84JI6
GO:GO:0005509hmmpanther:PTHR14095hmmpanther:PTHR14095:SF6HOGENOM:HOG000265086
InParanoid:Q84JI6InterPro:IPR002048InterPro:IPR011992InterPro:IPR018247
KEGG:ath:AT1G03960KO:K11583OMA:CTDIVTRPaxDb:Q84JI6
Pfam:PF13499Pfam:Q84JI6Pfscan:PS50222PhylomeDB:Q84JI6
PIR:E86170PRIDE:Q84JI6PRO:PR:Q84JI6PROSITE:PS00018
PROSITE:PS50222ProteinModelPortal:Q84JI6Proteomes:UP000006548Reactome:R-ATH-113501
Reactome:R-ATH-69231RefSeq:NP_171892.2RefSeq:NP_973757.1scanprosite:PS00018
SMR:Q84JI6STRING:3702.AT1G03960.1SUPFAM:SSF47473TAIR:AT1G03960
UniGene:At.42504UniProt:Q84JI6
Coordinates (TAIR10) chr1:+:1014085..1017472
Molecular Weight (calculated) 61241.70 Da
IEP (calculated) 4.58
GRAVY (calculated) -0.39
Length 529 amino acids
Sequence (TAIR10)
(BLAST)
001: MDIDGVDDDL HILDPELLQL PGLSPSPLKP TSLIADDLFS QWLSLPETAT LVKSLIDDAK SGTPTNKSKN LPSVFLSSST PPLSPRSSSG SPRFSRQRTS
101: PPSLHSPLRS LKEPKRQLIP QFYYQHGRPP AKELKEQCLS MVDQVFSNYI DGLHVDEFKS ITKQVCKLPS FLSPALFRKI DPNCTDIVTR DAFIKYWIDG
201: NMLTMDTASQ IYNILRQQGC SYLRQADFKP VLDELLATHP GLEFLRTISE FQERYAETVI YRIFYYINRS GTGCLTLREL RRGNLIAAMQ QLDEEDDINK
301: IIRYFSYEHF YVIYCKFWEL DGDHDCFIDK DNLIKYGNNA LTYRIVDRIF SQIPRKFTSK VEGKMSYEDF VYFILAEEDK SSEPSLEYWF KCVDLDGNGV
401: ITSNEMQFFF EEQLHRMECI TQEAVLFSDI LCQIIDMIGP EKENCITLQD LKGSKLSANV FNILFNLNKF MAFETRDPFL IRQEREDPNL TEWDRFAQRE
501: YARLSMEEDV DEVSNGSADV WDEPLEPPF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)