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AT5G54260.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:30961429 (2019): nucleus
  • PMID:28865150 (2017): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : DNA repair and meiosis protein (Mre11)
Curator
Summary (TAIR10)
DNA repair and meiotic recombination protein, component of MRE11 complex with RAD50 and NBS1
Computational
Description (TAIR10)
MEIOTIC RECOMBINATION 11 (MRE11); FUNCTIONS IN: hydrolase activity, manganese ion binding, protein serine/threonine phosphatase activity, exonuclease activity, endonuclease activity; INVOLVED IN: double-strand break repair, DNA metabolic process; LOCATED IN: nucleus; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Metallophosphoesterase (InterPro:IPR004843), DNA repair exonuclease (InterPro:IPR003701), Mre11, DNA-binding (InterPro:IPR007281); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioGrid:20758eggNOG:COG0420eggNOG:KOG2310EMBL:AB010695
EMBL:AJ243822EMBL:CP002688EnsemblPlants:AT5G54260EnsemblPlants:AT5G54260.1
entrez:835514Gene3D:3.60.21.10GeneID:835514Genevisible:Q9XGM2
GO:GO:0000785GO:GO:0000791GO:GO:0000795GO:GO:0004519
GO:GO:0006302GO:GO:0008408GO:GO:0030145GO:GO:0030870
GO:GO:0051321Gramene:AT5G54260.1hmmpanther:PTHR10139hmmpanther:PTHR10139:SF1
HOGENOM:HOG000216581InParanoid:Q9XGM2InterPro:IPR003701InterPro:IPR004843
InterPro:IPR007281InterPro:IPR029052iPTMnet:Q9XGM2KEGG:ath:AT5G54260
KO:K10865MINT:MINT-8066900OMA:RMFVNKQPANTHER:PTHR10139:SF1
PaxDb:Q9XGM2Pfam:PF00149Pfam:PF04152Pfam:Q9XGM2
PhylomeDB:Q9XGM2PIR:T52564PIRSF:PIRSF000882PRIDE:Q9XGM2
PRO:PR:Q9XGM2ProteinModelPortal:Q9XGM2Proteomes:UP000006548Reactome:R-ATH-2559586
Reactome:R-ATH-5685939Reactome:R-ATH-5693548Reactome:R-ATH-5693565RefSeq:NP_200237.1
SMART:SM01347SMR:Q9XGM2STRING:3702.AT5G54260.1SUPFAM:SSF56300
TAIR:AT5G54260tair10-symbols:ATMRE11tair10-symbols:MRE11TIGRfam:TIGR00583
TIGRFAMs:TIGR00583UniGene:At.493UniProt:Q9XGM2
Coordinates (TAIR10) chr5:+:22032702..22037749
Molecular Weight (calculated) 80295.30 Da
IEP (calculated) 6.62
GRAVY (calculated) -0.68
Length 720 amino acids
Sequence (TAIR10)
(BLAST)
001: MSREDFSDTL RVLVATDCHL GYMEKDEIRR HDSFKAFEEI CSIAEEKQVD FLLLGGDLFH ENKPSRTTLV KAIEILRRHC LNDKPVQFQV VSDQTVNFQN
101: AFGQVNYEDP HFNVGLPVFS IHGNHDDPAG VDNLSAIDIL SACNLVNYFG KMVLGGSGVG QITLYPILMK KGSTTVALYG LGNIRDERLN RMFQTPHAVQ
201: WMRPEVQEGC DVSDWFNILV LHQNRVKSNP KNAISEHFLP RFLDFIVWGH EHECLIDPQE VSGMGFHITQ PGSSVATSLI DGESKPKHVL LLEIKGNQYR
301: PTKIPLTSVR PFEYTEIVLK DESDIDPNDQ NSILEHLDKV VRNLIEKASK KAVNRSEIKL PLVRIKVDYS GFMTINPQRF GQKYVGKVAN PQDILIFSKA
401: SKKGRSEANI DDSERLRPEE LNQQNIEALV AESNLKMEIL PVNDLDVALH NFVNKDDKLA FYSCVQYNLQ ETRGKLAKDS DAKKFEEDDL ILKVGECLEE
501: RLKDRSTRPT GSSQFLSTGL TSENLTKGSS GIANASFSDD EDTTQMSGLA PPTRGRRGSS TANTTRGRAK APTRGRGRGK ASSAMKQTTL DSSLGFRQSQ
601: RSASAAASAA FKSASTIGED DVDSPSSEEV EPEDFNKPDS SSEDDESTKG KGRKRPATTK RGRGRGSGTS KRGRKNESSS SLNRLLSSKD DDEDEDDEDR
701: EKKLNKSQPR VTRNYGALRR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)