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AT3G22180.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : DHHC-type zinc finger family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
DHHC-type zinc finger family protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, DHHC-type (InterPro:IPR001594); BEST Arabidopsis thaliana protein match is: DHHC-type zinc finger family protein (TAIR:AT4G15080.1); Has 4636 Blast hits to 4623 proteins in 247 species: Archae - 0; Bacteria - 0; Metazoa - 2035; Fungi - 613; Plants - 838; Viruses - 0; Other Eukaryotes - 1150 (source: NCBI BLink).
Protein Annotations
BRENDA:2.3.1.225EC:2.3.1.225eggNOG:COG5273eggNOG:KOG1311
EMBL:AP001306EMBL:CP002686EnsemblPlants:AT3G22180EnsemblPlants:AT3G22180.1
entrez:821782GeneID:821782Genevisible:Q9LIE4GO:GO:0005886
GO:GO:0008270GO:GO:0016021GO:GO:0019706GO:GO:0030659
Gramene:AT3G22180.1hmmpanther:PTHR22883hmmpanther:PTHR22883:SF15HOGENOM:HOG000242421
InParanoid:Q9LIE4InterPro:IPR001594iPTMnet:Q9LIE4KEGG:ath:AT3G22180
OMA:PRIMSIFPaxDb:Q9LIE4Pfam:PF01529Pfam:Q9LIE4
Pfscan:PS50216PhylomeDB:Q9LIE4PRIDE:Q9LIE4PRO:PR:Q9LIE4
PROSITE:PS50216ProteinModelPortal:Q9LIE4Proteomes:UP000006548RefSeq:NP_188857.1
STRING:3702.AT3G22180.1TAIR:AT3G22180TMHMM:TMhelixUniGene:At.37920
UniProt:Q9LIE4
Coordinates (TAIR10) chr3:+:7827190..7830508
Molecular Weight (calculated) 76878.40 Da
IEP (calculated) 8.27
GRAVY (calculated) -0.16
Length 706 amino acids
Sequence (TAIR10)
(BLAST)
001: MVRKHGWQLP AHTLQVIAIT VFCLLVVAFY AFFAPFVGGR IWEYVLIGVY SPVAILVFVL YVRCTAINPA DPRIMSIFDT GVNGDGMVRG LSRNYDETGS
101: QLQASPSVVS RSSTVAGNSS VKGSVEDAQR VESVSRRSCY NPLAVFCYVF VVEDCRKKEG PAEEQGNSEE ALFCTLCNCE VRKFSKHCRS CDKCVDCFDH
201: HCKWLNNCVG RKNYVTFVSL MSASLLWLII EAAVGIAVIV RVFVNKQTME TEIVNRLGNS FSRAPLAAVV GLCTAVAIFA CFPLGELLFF HMLLIKKGIT
301: TYEYVVAMRA MSEAPDGASV DEEIQNVLYS PTGSATTGFS GGSSLGLPYR GVWCTPPRVF DNQDEVIPHL DPCMVPSTVD PDAPGSEKGT KALKRPVKRN
401: AWKLAKLDPN EAARAAARAR ASSSVLRPID NRHLPDNDLS SIGTVSIISS VSTDANVAAS KEIRNNDLRS SLSRNSFAPS QGSRDEYDTG SHGMSNLSSP
501: SHVHESVTLA PLPQNPTIVG NRFTATSHHM HSTFDDKVLH RGNDADPLFL FAPATSHLRD VRKTSVVWDP EAGRYVSAPV TTTSEVRNRL LNPSSQTAST
601: QNPRPILPAH DSSSGSSALR DPLPLHQAER RLTYTGDSIF YGGPLINIPT RDTPRSGRGL VRDVQDRLAS TVHRDARIRR DSTSNQLPVF APGGLGANSQ
701: TGSNIK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)