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AT2G46040.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : ARID/BRIGHT DNA-binding domain;ELM2 domain protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
ARID/BRIGHT DNA-binding domain;ELM2 domain protein; FUNCTIONS IN: DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; EXPRESSED IN: sperm cell, male gametophyte, cultured cell, seed, pollen tube; EXPRESSED DURING: M germinated pollen stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: ELM2 (InterPro:IPR000949), ARID/BRIGHT DNA-binding domain (InterPro:IPR001606); BEST Arabidopsis thaliana protein match is: ARID/BRIGHT DNA-binding domain;ELM2 domain protein (TAIR:AT4G11400.1); Has 198 Blast hits to 184 proteins in 31 species: Archae - 0; Bacteria - 1; Metazoa - 35; Fungi - 2; Plants - 156; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).
Protein Annotations
BioGrid:4547eggNOG:ENOG410IK72eggNOG:ENOG410YIMVEMBL:AC005397
EMBL:BT003984EMBL:BT005067EMBL:CP002685EnsemblPlants:AT2G46040
EnsemblPlants:AT2G46040.1entrez:819212Gene3D:1.10.150.60GeneID:819212
Genevisible:Q84JT7GO:GO:0000118GO:GO:0003677GO:GO:0006351
GO:GO:0006355GO:GO:0010628GO:GO:0016575GO:GO:0048235
GO:GO:0048555GO:GO:0048556Gramene:AT2G46040.1hmmpanther:PTHR22970
hmmpanther:PTHR22970:SF23HOGENOM:HOG000240640InParanoid:Q84JT7InterPro:IPR000949
InterPro:IPR001606iPTMnet:Q84JT7KEGG:ath:AT2G46040OMA:RECPLET
PaxDb:Q84JT7Pfam:PF01388Pfam:Q84JT7Pfscan:PS51011
Pfscan:PS51156PhylomeDB:Q84JT7PIR:A84898PRIDE:Q84JT7
PRO:PR:Q84JT7PROSITE:PS51011PROSITE:PS51156ProteinModelPortal:Q84JT7
Proteomes:UP000006548RefSeq:NP_182128.2SMART:SM00501SMART:SM01189
SMR:Q84JT7STRING:3702.AT2G46040.1SUPFAM:SSF46774TAIR:AT2G46040
UniGene:At.36562UniProt:Q84JT7
Coordinates (TAIR10) chr2:-:18935684..18937807
Molecular Weight (calculated) 63318.00 Da
IEP (calculated) 7.60
GRAVY (calculated) -0.58
Length 562 amino acids
Sequence (TAIR10)
(BLAST)
001: MAGWSMVADE DAVDYSKTPK SLDANRSPES VNPESTGFEK KIKELISLFR PLLDSFLAEF CSADGFLPLP AMTGEGRTVD LFNLFLNVTH KGGFDAVSEN
101: GSWDEVVQES GLESYDSASA KLIYVKYLDA FGRWLNRVVA GDTDVSSVEL SGISDALVAR LNGFLSEVKK KYELRKGRPA KELGAELKWF ISKTKRRYDK
201: HHVGKESASN DAVKEFQGSK LAERRLEQIM ILESVTQECS SPGKRKRECP LETLKWLSDV AKDPCDPSLG IVPDRSEWVS YGSEEPWKQL LLFRASRTNN
301: DSACEKTWQK VQKMHPCLYD DSAGASYNLR ERLSYEDYKR GKTGNGSDIG SSDEEDRPCA LVGSKFQAKV PEWTGITPES DSKWLGTRIW PLTKEQTKAN
401: LLIERDRIGK GRQDPCGCHN PGSIECVKFH ITAKRDKLKL ELGPAFYMWC FDVMGECTLQ YWTDLELKKI KSLMSSPPSL SPAFIHQAKM ILPSKSRGKI
501: VSYFYNVTLL QYRASQSRIT PHDIDSDTDQ IFLRATENEN PAPEANTFQK PALLSPNKKR CR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)