AT2G46040.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : ARID/BRIGHT DNA-binding domain;ELM2 domain protein | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
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Computational Description (TAIR10) |
ARID/BRIGHT DNA-binding domain;ELM2 domain protein; FUNCTIONS IN: DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; EXPRESSED IN: sperm cell, male gametophyte, cultured cell, seed, pollen tube; EXPRESSED DURING: M germinated pollen stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: ELM2 (InterPro:IPR000949), ARID/BRIGHT DNA-binding domain (InterPro:IPR001606); BEST Arabidopsis thaliana protein match is: ARID/BRIGHT DNA-binding domain;ELM2 domain protein (TAIR:AT4G11400.1); Has 198 Blast hits to 184 proteins in 31 species: Archae - 0; Bacteria - 1; Metazoa - 35; Fungi - 2; Plants - 156; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr2:-:18935684..18937807 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 63318.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 7.60 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.58 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Length | 562 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MAGWSMVADE DAVDYSKTPK SLDANRSPES VNPESTGFEK KIKELISLFR PLLDSFLAEF CSADGFLPLP AMTGEGRTVD LFNLFLNVTH KGGFDAVSEN 101: GSWDEVVQES GLESYDSASA KLIYVKYLDA FGRWLNRVVA GDTDVSSVEL SGISDALVAR LNGFLSEVKK KYELRKGRPA KELGAELKWF ISKTKRRYDK 201: HHVGKESASN DAVKEFQGSK LAERRLEQIM ILESVTQECS SPGKRKRECP LETLKWLSDV AKDPCDPSLG IVPDRSEWVS YGSEEPWKQL LLFRASRTNN 301: DSACEKTWQK VQKMHPCLYD DSAGASYNLR ERLSYEDYKR GKTGNGSDIG SSDEEDRPCA LVGSKFQAKV PEWTGITPES DSKWLGTRIW PLTKEQTKAN 401: LLIERDRIGK GRQDPCGCHN PGSIECVKFH ITAKRDKLKL ELGPAFYMWC FDVMGECTLQ YWTDLELKKI KSLMSSPPSL SPAFIHQAKM ILPSKSRGKI 501: VSYFYNVTLL QYRASQSRIT PHDIDSDTDQ IFLRATENEN PAPEANTFQK PALLSPNKKR CR |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)