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AT1G14770.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : RING/FYVE/PHD zinc finger superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RING/FYVE/PHD zinc finger superfamily protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, PHD-type, conserved site (InterPro:IPR019786), Zinc finger, FYVE/PHD-type (InterPro:IPR011011); BEST Arabidopsis thaliana protein match is: RING/FYVE/PHD zinc finger superfamily protein (TAIR:AT1G68030.1); Has 95 Blast hits to 84 proteins in 31 species: Archae - 0; Bacteria - 0; Metazoa - 18; Fungi - 12; Plants - 59; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IWFZeggNOG:ENOG410Z06IEMBL:AC006917EMBL:AK118871
EMBL:BT008587EMBL:CP002684EnsemblPlants:AT1G14770EnsemblPlants:AT1G14770.1
EnsemblPlants:AT1G14770.2entrez:838042Gene3D:3.30.40.10GeneID:838042
GO:GO:0046872Gramene:AT1G14770.1Gramene:AT1G14770.2InterPro:IPR011011
InterPro:IPR013083InterPro:IPR019786KEGG:ath:AT1G14770OMA:LPQCALE
PhylomeDB:Q9LQV4PROSITE:PS01359Proteomes:UP000006548RefSeq:NP_172930.1
RefSeq:NP_973829.1scanprosite:PS01359SMR:Q9LQV4SUPFAM:SSF57903
TAIR:AT1G14770UniGene:At.41953UniProt:Q9LQV4
Coordinates (TAIR10) chr1:-:5086867..5088437
Molecular Weight (calculated) 48560.00 Da
IEP (calculated) 4.46
GRAVY (calculated) -0.57
Length 429 amino acids
Sequence (TAIR10)
(BLAST)
001: MDDHGGSDLS LEDLMDEYSS RPAQIAEWLW CIEYVAKFVK DLSCLLDLMN IGYQYSDDYG KRINEVLSLR VLEFMFDPSM SDANGVGVAS ALEEKVEFDL
101: SLSNADVLRG ILKEIPVAEL RVGMPELSKF NVLPFIAHKN LCLPQCALEK LRDVSLMENQ TSATPFMETN DPVFRDDRSV HMDLCEEEPV DEQQLHIGNA
201: KEPTDEQHVH IGNEKESIDE QQVHIGLELN RNEKDKVIAI DDEDEPMHTN EKGEVVVIND DTESDQGTTS DGTFSPRHNG NTTDETTFSP SSRRSPEDAH
301: VKCTKDGTWL ISGSDDESDK DPPSIKKNPN TYLNLLPSSS RTRPENVCWK CEKEGTLLIC SRSECAAKVH KECLNCPVNV DEYGNFLCPL CWYDRLAMEY
401: HESQKLISCA KRRLVKCFPV LSIRSKRLK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)