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AT4G12770.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
golgi 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Chaperone DnaJ-domain superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Chaperone DnaJ-domain superfamily protein; FUNCTIONS IN: heat shock protein binding; INVOLVED IN: biological_process unknown; LOCATED IN: cytosol, plasma membrane; EXPRESSED IN: male gametophyte, guard cell, cultured cell, pollen tube; EXPRESSED DURING: M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Heat shock protein DnaJ, N-terminal (InterPro:IPR001623); BEST Arabidopsis thaliana protein match is: Chaperone DnaJ-domain superfamily protein (TAIR:AT4G12780.1); Has 79558 Blast hits to 47178 proteins in 2717 species: Archae - 253; Bacteria - 22646; Metazoa - 24220; Fungi - 7704; Plants - 5305; Viruses - 398; Other Eukaryotes - 19032 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410YGT5eggNOG:KOG0431EMBL:AK228848EMBL:AL049640
EMBL:AL161534EMBL:CP002687EnsemblPlants:AT4G12770EnsemblPlants:AT4G12770.1
entrez:826889ExpressionAtlas:Q0WQ57Gene3D:1.10.287.110GeneID:826889
Genevisible:Q0WQ57GO:GO:0005829GO:GO:0005886hmmpanther:PTHR23172
HOGENOM:HOG000082764InParanoid:Q0WQ57InterPro:IPR001623iPTMnet:Q0WQ57
ncoils:CoilOMA:DVEIRRWPaxDb:Q0WQ57Pfam:Q0WQ57
PhylomeDB:Q0WQ57PIR:T06635PRIDE:Q0WQ57PRO:PR:Q0WQ57
ProteinModelPortal:Q0WQ57Proteomes:UP000006548RefSeq:NP_193013.2SMR:Q0WQ57
STRING:3702.AT4G12770.1SUPFAM:SSF46565TAIR:AT4G12770UniGene:At.3095
UniProt:Q0WQ57
Coordinates (TAIR10) chr4:-:7506736..7511408
Molecular Weight (calculated) 98331.90 Da
IEP (calculated) 6.74
GRAVY (calculated) -1.00
Length 891 amino acids
Sequence (TAIR10)
(BLAST)
001: MDDFTGLLAR DFGLKPQGKS APMASQSNSS AADFNTFASS YSFASAAGKK SDSLPVFDDL GRDGDDLLFR DVFSGPPPKY GSSGDSRSPS APAFDYDVMF
101: KEPKSKSASS MPVYDKPVYD DEDVFESIPE LKIPSTSSQS ARFENVFSSI SSSPTKHRKQ NSSPFDDLMG NNLGKKESDR EEKGSSIFDD LIPGFGRTSS
201: PPAKRTTSET TSQSQKPPYR TAETSSNVKE DPFVVLEEST STLREPSTGG FTDPLEEIGK FNSRKTDHSS VHGGVFVDTD PLDSLGKSGP DMNSRGKSHL
301: RPPGNISGSQ SPVESSGLYH SKNVSFDDVV EPQNTSTPPP TNSDGSFESS DDVWLTVSEI PLFTQPTSAP PPTRPPPPRP TRPIKKKVNE PSIPTSAYHS
401: HVPSSGRASV NSPTASQMDE LDDFSIGRNQ TAANGYPDPS SGEDSDVFST AAASAAAMKD AMDKAEAKFR HAKERREKES LKASRSREGD HTENYDSRER
501: ELREKQVRLD RERAEREAEM EKTQAREREE REREQKRIER ERERLLARQA VERATREARE RAATEAHAKV QRAAVGKVTD ARERAERAAV QRAHAEARER
601: AAAGAREKAE KAAAEARERA NAEVREKEAK VRAERAAVER AAAEARGRAA AQAKAKQQQE NNNDLDSFFN SVSRPSSVPR QRTNPPDPFQ DSWNKGGSFE
701: SSRPSSRVPS GPTENLRKAS SATNIVDDLS SIFGAPASQS GGFQDVDGET EERRRARLER HQRTQERAAK ALAEKNERDL QVQREQAEKD RIGGTLDVEI
801: RRWGAGKEGN LRALLSTLQY VLWPECGWQP VSLTDLITGA SVKKVYRKAT LCIHPDKVQQ KGANLQQKYI AEKVFDMLKE AWNKFNSEEL F
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)