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AT4G02610.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31186290 (2019): cytosol None
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Aldolase-type TIM barrel family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Aldolase-type TIM barrel family protein; CONTAINS InterPro DOMAIN/s: Tryptophan synthase, alpha chain, active site (InterPro:IPR018204), Aldolase-type TIM barrel (InterPro:IPR013785), Ribulose-phosphate binding barrel (InterPro:IPR011060), Tryptophan synthase, alpha chain (InterPro:IPR002028); BEST Arabidopsis thaliana protein match is: tryptophan synthase alpha chain (TAIR:AT3G54640.1); Has 7706 Blast hits to 7706 proteins in 2293 species: Archae - 225; Bacteria - 4607; Metazoa - 6; Fungi - 175; Plants - 137; Viruses - 0; Other Eukaryotes - 2556 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT4G02610-MONOMERBRENDA:4.1.2.8EC:4.1.2.8EC:4.2.1.20
eggNOG:COG0159eggNOG:KOG4175EMBL:AC002330EMBL:AK117668
EMBL:AL161494EMBL:BT006097EMBL:CP002687EMBL:F20005
EnsemblPlants:AT4G02610EnsemblPlants:AT4G02610.1entrez:828226Gene3D:3.20.20.70
GeneID:828226Genevisible:O22765GO:GO:0004834GO:GO:0005737
GO:GO:0009851GO:GO:0033984Gramene:AT4G02610.1gramene_pathway:4.1.2.13
gramene_pathway:TRPSYN-PWYHAMAP:MF_00131hmmpanther:PTHR10314hmmpanther:PTHR10314:SF88
HOGENOM:HOG000223816InParanoid:O22765InterPro:IPR002028InterPro:IPR011060
InterPro:IPR013785InterPro:IPR018204KEGG:00260+4.2.1.20KEGG:00400+4.2.1.20
KEGG:ath:AT4G02610KO:K01695ncoils:CoilOMA:DYNPHIP
PaxDb:O22765Pfam:O22765Pfam:PF00290PhylomeDB:O22765
PIR:T01088PRIDE:O22765PRO:PR:O22765ProMEX:O22765
PROSITE:PS00167ProteinModelPortal:O22765Proteomes:UP000006548RefSeq:NP_192170.1
scanprosite:PS00167SMR:O22765STRING:3702.AT4G02610.1SUPFAM:SSF51366
TAIR:AT4G02610TIGRfam:TIGR00262TIGRFAMs:TIGR00262UniGene:At.48825
UniGene:At.68477UniPathway:UPA00035UniProt:O22765
Coordinates (TAIR10) chr4:+:1147662..1149217
Molecular Weight (calculated) 29580.90 Da
IEP (calculated) 5.82
GRAVY (calculated) 0.03
Length 275 amino acids
Sequence (TAIR10)
(BLAST)
001: MDLLKTPSST VGLSETFARL KSQGKVALIP YITAGDPDLS TTAKALKVLD SCGSDIIELG VPYSDPLADG PAIQAAARRS LLKGTNFNSI ISMLKEVIPQ
101: LSCPIALFTY YNPILRRGVE NYMTVIKNAG VHGLLVPDVP LEETETLRNE ARKHQIELVL LTTPTTPKER MNAIVEASEG FIYLVSSVGV TGTRESVNEK
201: VQSLLQQIKE ATSKPVAVGF GISKPEHVKQ VAEWGADGVI VGSAMVKILG ESESPEQGLK ELEFFTKSLK SALVS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)