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AT4G09550.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:22505201 (2012): nucleus nuclear envelope nuclear inner membrane
  • PMID:22505201 (2012): nucleus nuclear matrix
  • PMID:22427335 (2012): nucleus nuclear envelope nuclear inner membrane
  • PMID:22427335 (2012): nucleus nuclear matrix
  • PMID:24134884 (2013): cytoskeleton microtubules
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : AtGCP3 interacting protein 1
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
AtGCP3 interacting protein 1 (GIP1); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3743 (InterPro:IPR022214); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF3743) (TAIR:AT1G73790.1); Has 222 Blast hits to 222 proteins in 100 species: Archae - 0; Bacteria - 0; Metazoa - 54; Fungi - 64; Plants - 72; Viruses - 0; Other Eukaryotes - 32 (source: NCBI BLink).
Protein Annotations
BioGrid:11838DNASU:826539eggNOG:ENOG410J3XSeggNOG:ENOG410XVXZ
EMBL:AK175417EMBL:AL161515EMBL:BT010618EMBL:CP002687
EnsemblPlants:AT4G09550EnsemblPlants:AT4G09550.1entrez:826539GeneID:826539
Genevisible:Q9M0N8GO:GO:0000226GO:GO:0000776GO:GO:0000930
GO:GO:0005635GO:GO:0005640GO:GO:0005828GO:GO:0007052
GO:GO:0008274GO:GO:0009524GO:GO:0009574GO:GO:0034080
GO:GO:0034508GO:GO:0042393GO:GO:0051418GO:GO:0072686
Gramene:AT4G09550.1hmmpanther:PTHR28520hmmpanther:PTHR28520:SF2HOGENOM:HOG000217071
InParanoid:Q9M0N8IntAct:Q9M0N8InterPro:IPR022214KEGG:ath:AT4G09550
KO:K18633OMA:QELWRENPANTHER:PTHR28520PaxDb:Q9M0N8
Pfam:PF12554Pfam:Q9M0N8PhylomeDB:Q9M0N8PIR:E85097
PRIDE:Q9M0N8PRO:PR:Q9M0N8Proteomes:UP000006548RefSeq:NP_192693.1
STRING:3702.AT4G09550.1TAIR:AT4G09550tair10-symbols:ATGIP1tair10-symbols:GIP1
UniGene:At.33686UniProt:Q9M0N8
Coordinates (TAIR10) chr4:+:6039706..6039921
Molecular Weight (calculated) 7835.38 Da
IEP (calculated) 4.52
GRAVY (calculated) -0.04
Length 71 amino acids
Sequence (TAIR10)
(BLAST)
1: MDEEASRTAR ESLELVFRMS NILDTGLDRH TLSVLIALCD LGVNPEALAT VVKELRRESI PDSVTTTPSI H
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)