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AT1G53280.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31520498 (2020): mitochondrion
  • PMID:31186290 (2019): plastid plastid stroma
  • PMID:30962257 (2019): plastid
  • PMID:30961429 (2019): nucleus
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:30394608 (2019): plastid
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:27137770 (2016): plastid plastid stroma
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:24872594 (2014): plastid plastid stroma
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:24124904 (2013): plastid
  • PMID:23851315 (2013): plastid
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:23549413 (2013): plastid plastid stroma
  • PMID:21531424 (2011): plastid
  • PMID:20423899 (2010): plastid
  • PMID:20061580 (2010): plastid plastid stroma
  • PMID:18431481 (2008): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Class I glutamine amidotransferase-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Class I glutamine amidotransferase-like superfamily protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DJ-1 (InterPro:IPR006287), ThiJ/PfpI (InterPro:IPR002818); BEST Arabidopsis thaliana protein match is: Class I glutamine amidotransferase-like superfamily protein (TAIR:AT3G14990.1); Has 10790 Blast hits to 6453 proteins in 1943 species: Archae - 322; Bacteria - 9097; Metazoa - 532; Fungi - 91; Plants - 351; Viruses - 0; Other Eukaryotes - 397 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0693eggNOG:KOG2764EMBL:AC008007EMBL:AY056268
EMBL:AY084268EMBL:AY091184EMBL:CP002684EnsemblPlants:AT1G53280
EnsemblPlants:AT1G53280.1entrez:841762Gene3D:3.40.50.880GeneID:841762
Genevisible:Q9MAH3GO:GO:0003713GO:GO:0005829GO:GO:0006357
GO:GO:0009507GO:GO:0009570GO:GO:0019172GO:GO:0019243
GO:GO:0019249GO:GO:0070301Gramene:AT1G53280.1hmmpanther:PTHR11019
hmmpanther:PTHR11019:SF100HOGENOM:HOG000077645InParanoid:Q9MAH3IntAct:Q9MAH3
InterPro:IPR002818InterPro:IPR006287InterPro:IPR029062KEGG:ath:AT1G53280
KO:K03152OMA:TTMEFAVPaxDb:Q9MAH3Pfam:PF01965
Pfam:Q9MAH3PhylomeDB:Q9MAH3PRIDE:Q9MAH3PRO:PR:Q9MAH3
ProteinModelPortal:Q9MAH3Proteomes:UP000006548RefSeq:NP_564626.1SMR:Q9MAH3
STRING:3702.AT1G53280.1SUPFAM:SSF52317TAIR:AT1G53280TIGRfam:TIGR01383
TIGRFAMs:TIGR01383UniGene:At.24375UniGene:At.66897UniProt:Q9MAH3
Coordinates (TAIR10) chr1:-:19864942..19867341
Molecular Weight (calculated) 46993.30 Da
IEP (calculated) 7.95
GRAVY (calculated) 0.07
Length 438 amino acids
Sequence (TAIR10)
(BLAST)
001: MASSSLCHRY FNKITVTPFF NTKKLHHYSP RRISLRVNRR SFSISATMSS STKKVLIPVA HGTEPFEAVV MIDVLRRGGA DVTVASVENQ VGVDACHGIK
101: MVADTLLSDI TDSVFDLIML PGGLPGGETL KNCKPLEKMV KKQDTDGRLN AAICCAPALA FGTWGLLEGK KATCYPVFME KLAACATAVE SRVEIDGKIV
201: TSRGPGTTME FSVTLVEQLL GKEKAVEVSG PLVMRPNPGD EYTITELNQV SWSFEGTPQI LVPIADGSEE MEAVAIIDVL KRAKANVVVA ALGNSLEVVA
301: SRKVKLVADV LLDEAEKNSY DLIVLPGGLG GAEAFASSEK LVNMLKKQAE SNKPYGAICA SPALVFEPHG LLKGKKATAF PAMCSKLTDQ SHIEHRVLVD
401: GNLITSRGPG TSLEFALAIV EKFYGREKGL QLSKATLV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)