suba logo
AT5G01730.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
cytosol 0.977
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:30447334 (2019): plasma membrane
  • PMID:24872594 (2014): plastid
  • PMID:23549413 (2013): plastid plastid stroma
  • PMID:22318864 (2012): plasma membrane
  • PMID:22274653 (2012): plastid
  • PMID:16461379 (2006): plastid plastid stroma plastoglobules
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : SCAR family protein 4
Curator
Summary (TAIR10)
Encodes a member of the SCAR family.These proteins are part of a complex (WAVE) complex.The SCAR subunit activates the ARP2/3 complex which in turn act as a nucleator for actin filaments.
Computational
Description (TAIR10)
SCAR family protein 4 (SCAR4); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: positive regulation of actin nucleation; LOCATED IN: SCAR complex, chloroplast, plastoglobule; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: SCAR homolog 2 (TAIR:AT2G38440.1); Has 1330 Blast hits to 874 proteins in 188 species: Archae - 2; Bacteria - 349; Metazoa - 454; Fungi - 169; Plants - 213; Viruses - 0; Other Eukaryotes - 143 (source: NCBI BLink).
Protein Annotations
BioGrid:16963EMBL:AL161946EMBL:AY743927EMBL:CP002688
EnsemblPlants:AT5G01730EnsemblPlants:AT5G01730.1entrez:831687GeneID:831687
Genevisible:Q5XPJ6GO:GO:0005856GO:GO:0009507GO:GO:0010287
GO:GO:0030036GO:GO:0031209GO:GO:0051127Gramene:AT5G01730.1
hmmpanther:PTHR12902hmmpanther:PTHR12902:SF12HOGENOM:HOG000154263InParanoid:Q5XPJ6
IntAct:Q5XPJ6InterPro:IPR028288KEGG:ath:AT5G01730OMA:LPPTQWW
PANTHER:PTHR12902PaxDb:Q5XPJ6Pfam:Q5XPJ6PhylomeDB:Q5XPJ6
PIR:T48194PRIDE:Q5XPJ6PRO:PR:Q5XPJ6ProteinModelPortal:Q5XPJ6
Proteomes:UP000006548RefSeq:NP_195793.3STRING:3702.AT5G01730.1TAIR:AT5G01730
tair10-symbols:ATSCAR4tair10-symbols:SCAR4tair10-symbols:WAVE3UniGene:At.71562
UniProt:Q5XPJ6
Coordinates (TAIR10) chr5:-:273019..277561
Molecular Weight (calculated) 128625.00 Da
IEP (calculated) 4.29
GRAVY (calculated) -0.68
Length 1170 amino acids
Sequence (TAIR10)
(BLAST)
0001: MALTRYQIRN EYGLADKELY QSADKEDPEA LLEAASMAGL VGVLRQLGDL SEFAAEVFHC LHEQLMTTAA RGHGLAMRLQ HLEADFPSVE IPILSQTDHS
0101: TFFYEPGLEW HSDLQTKEDL ISPRNLPRCI MDSYEECHGP PQLFLLDKFD VAGSGSCLKR YSDPSLLKTH TTSAVVATSK LGKDKRLRQS KKKGSHTTIK
0201: ETPEDSRTSH AKLHQLFFLE HVENGHRNPE FHVKLKRRQL NGPPINSSSG ASYMEKFLKN SSPYCERVHG TMDQSSPAME TEVTVCSEQE DLPIPSLVYS
0301: NSGGTRKYNE MEIESIAGHE ILEIPFVPHE ITVNEKSPVV CLESSSSVNL CCKTNNDADS PASTESEVKE AGSDDKAGCD HGFPGFGQPQ ICTNAEVNQT
0401: EVLTQFSNVL RHSPEEGESS LLCTDIQRAS PESKPHKAEE AAVDLDESFS QMTPDIDSAG MGTLEILQTP FSLSCYESPA NLPEDSGSHL ELQSNKANAE
0501: ACEVFEVRRD PMLNISPETH LLKVTQVPQD AYEGGTNDVH SQHVFSVETA SEISVSALVE DQFSSITNQE IEALESEDIS SEAGHFIPDT KKSLNETSVA
0601: LESDFLLPNH YISTFDNFED LSLSADAQDY AAPKEDETNS QDGSSMNPAQ SKHISTSEIS SENGTLMSDT PRDLHTGYGS LSASSCLEDG LANPDLAEIS
0701: SYSGQEDPQT MSIVSDDSSD PEVPIPDGTC FAGDVDHDNQ TGLNNKAIET VPQKELETIS DPQESLLGTE ECLSSEYCLQ IQNQRQESPS ETGSANSRTS
0801: SDESPPTQNG SVGVQSSPLD VFPSSITEIE ALHAPYQEIF TSLNDHISES VLSKGLTDEE DFLNVSPESI LPLSTSLHET PQANPEITPP LPPLPPTQWW
0901: MGKLVESTEM PSLAGSGNNS FNIQRDENTQ NGSVQANEAQ YPSEVSVTDG ENHNFHIYTE ESKATEEQSP SGVNGTSDTY MESKHKCLNR TPEDSFSLAE
1001: SAQGLEADWR TEAMALEWFS QNLREHNNPH PAKLEEEEPQ VDHPLEKPGQ TKFRQTLRDN NSYNQNQKAG KLKRDEDTLV IGIDRSMLRK VSEGNRTHVG
1101: ARVDENDSLL EIIRSKSFNL RPADASGRPN FQVAVPKTNL KVAAILEKAN TLRQAMAGSD DEHDSDSWSE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)