suba logo
AT2G44050.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : 6,7-dimethyl-8-ribityllumazine synthase / DMRL synthase / lumazine synthase / riboflavin synthase
Curator
Summary (TAIR10)
6,7-dimethyl-8-ribityllumazine synthase / DMRL synthase / lumazine synthase / riboflavin synthase [Arabidopsis thaliana]. Acts in the jasmonic acid signaling pathway.
Computational
Description (TAIR10)
COI1 SUPPRESSOR1 (COS1); FUNCTIONS IN: 6,7-dimethyl-8-ribityllumazine synthase activity; INVOLVED IN: riboflavin biosynthetic process, jasmonic acid mediated signaling pathway; LOCATED IN: chloroplast stroma, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: 6,7-dimethyl-8-ribityllumazine synthase (InterPro:IPR002180), 6,7-dimethyl-8-ribityllumazine synthase, chloroplast (InterPro:IPR017420); Has 7351 Blast hits to 7351 proteins in 2325 species: Archae - 190; Bacteria - 4938; Metazoa - 2; Fungi - 209; Plants - 81; Viruses - 0; Other Eukaryotes - 1931 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT2G44050-MONOMERBioCyc:MetaCyc:AT2G44050-MONOMERBioGrid:4346BRENDA:2.5.1.78
EC:2.5.1.78eggNOG:COG0054eggNOG:KOG3243EMBL:AC004005
EMBL:AF148649EMBL:AY050913EMBL:AY091343EMBL:CP002685
EnsemblPlants:AT2G44050EnsemblPlants:AT2G44050.1entrez:819010Gene3D:3.40.50.960
GeneID:819010Genevisible:O80575GO:GO:0009231GO:GO:0009349
GO:GO:0009507GO:GO:0009570GO:GO:0016740Gramene:AT2G44050.1
gramene_plant_reactome:1119379gramene_plant_reactome:6875848HAMAP:MF_00178hmmpanther:PTHR21058
HOGENOM:HOG000229249InParanoid:O80575IntAct:O80575InterPro:IPR002180
InterPro:IPR017420KEGG:00740+2.5.1.78KEGG:ath:AT2G44050KO:K00794
OMA:MFGADKGPANTHER:PTHR21058PaxDb:O80575Pfam:O80575
Pfam:PF00885PhylomeDB:O80575PIR:T00685PIRSF:PIRSF038166
PRIDE:O80575PRO:PR:O80575ProteinModelPortal:O80575Proteomes:UP000006548
RefSeq:NP_181933.1SMR:O80575STRING:3702.AT2G44050.1SUPFAM:SSF52121
TAIR:AT2G44050tair10-symbols:COS1TIGRfam:TIGR00114TIGRFAMs:TIGR00114
UniGene:At.11483UniPathway:UPA00275UniProt:O80575
Coordinates (TAIR10) chr2:+:18224304..18225917
Molecular Weight (calculated) 24025.80 Da
IEP (calculated) 8.50
GRAVY (calculated) 0.09
Length 227 amino acids
Sequence (TAIR10)
(BLAST)
001: MKSLASPPCL RLIPTAHRQL NSRQSSSACY IHGGSSVNKS NNLSFSSSTS GFASPLAVEK ELRSSFVQTA AVRHVTGSLI RGEGLRFAIV VARFNEVVTK
101: LLLEGAIETF KKYSVREEDI EVIWVPGSFE IGVVAQNLGK SGKFHAVLCI GAVIRGDTTH YDAVANSAAS GVLSASINSG VPCIFGVLTC EDMDQALNRS
201: GGKAGNKGAE TALTALEMAS LFEHHLK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)