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AT1G02990.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
nucleus 0.773
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
BEST Arabidopsis thaliana protein match is: CW-type Zinc Finger (TAIR:AT3G62900.1); Has 5847 Blast hits to 4410 proteins in 438 species: Archae - 17; Bacteria - 452; Metazoa - 2463; Fungi - 354; Plants - 306; Viruses - 11; Other Eukaryotes - 2244 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IGBFeggNOG:ENOG4111YF4EMBL:AY080710EMBL:CP002684
EnsemblPlants:AT1G02990EnsemblPlants:AT1G02990.1entrez:839380ExpressionAtlas:Q8RXR8
GeneID:839380Gramene:AT1G02990.1hmmpanther:PTHR23336hmmpanther:PTHR23336:SF14
HOGENOM:HOG000149126IntAct:Q8RXR8PhylomeDB:Q8RXR8Proteomes:UP000006548
RefSeq:NP_171798.2TAIR:AT1G02990UniGene:At.42568UniProt:Q8RXR8
Coordinates (TAIR10) chr1:-:683065..686884
Molecular Weight (calculated) 118449.00 Da
IEP (calculated) 9.12
GRAVY (calculated) -0.90
Length 1069 amino acids
Sequence (TAIR10)
(BLAST)
0001: MFLALTQMLL SLTLMRNSKT SWDIFRKILK VEFLLKIWFG GYGSFLSMYQ RSPVCSRPKT SPEVQQNQLG GRSNCSASSL VPQLSISGSA SKPPASDVLV
0101: KLNKFVKSSH IGTPDSKHMS DAKTSSSAPS NHKTLRFRIK VGSSDLSSLK NVSTFTKEGL NMLPSASRVN CLSEVEQDLL NGICDSPTKI LMAMVSFPLH
0201: KDQLLSPLSD DLIQLGSKEK ILKDAGYGST NKTDAKSTPD GLVVSDSQKR AGKFPIGKKE KLRDRVKYRP PSNKLDRNHT VSNTEKEADK ESCEELVSKT
0301: MKLPLLSCLS PSYIHPAKEI DNVSDSNVES ILRGTNKDAA LMGSKPELED NVVAFSDRSV KETESINVRK DVYLIKGEPL NSLESNPKRE KAPSIEHVDY
0401: SSVVKGTQSE TRNEEQILKS KLPKVQRSQK GSSSIVTMNS QRGKDAAVNI IKKNVPDKLQ EDIEESEHMC KGFFGDSKES KEEKQISPVL KAEKEKLSEE
0501: NALGESFNSV KNDEEACDHL NLVCEPDLKH LIKPSDLNED RHTTKQSVRR EVKNKHSLEG GMENMGMESE RELSGVSKKP KTGKSRFSAV DQPGSNKSNQ
0601: ILEVLDTNKT MITQALAENV KDFAKASSHG ERDDRKRKLK ENEESGDCMR LREAAVMESS GENVRKRKRL KGSSCDEKEL PFSSESCDKE RSVSQENGRD
0701: SASHLPSTLS SPSLCKDLGS EIIKNNVRES KGSLVESVAP LALRVLDSGE LKSGRISERD EYHDTDYNAG ETLKRCRDGE AYSTIDRPGT TKKAAEDSKD
0801: RERAYGEDCS IENLKPKKSG RYPGENCIEG DSKQKSREEE SSAPSKDNNW GLVNNVQDLG TAVKVKTKES RSKKRPARKV SMECNKEDSR EYQDPNTKLD
0901: RSGSHFSSRQ KPDTANTSRG KSNPLEVTTE QLKNKSASPA QVEVLGHDTE ISNTKKQRLR NDNHSVTHDE GSRNQKQNGS RHKDHVGLSP FKKESTSQTA
1001: SNSIKEATDL KHMADRLKNA VSNHESTGVY FQAALKFLHG ASLLESSGTT IARSKDIYGS TAKLCDQRN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)