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AT1G27360.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : squamosa promoter-like 11
Curator
Summary (TAIR10)
In conjunction with SPL10 and SPL2, SPL11 redundantly controls proper development of lateral organs in association with shoot maturation in the reproductive phase.
Computational
Description (TAIR10)
squamosa promoter-like 11 (SPL11); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, regulation of timing of transition from vegetative to reproductive phase; LOCATED IN: nucleus; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor, SBP-box (InterPro:IPR004333); BEST Arabidopsis thaliana protein match is: squamosa promoter binding protein-like 10 (TAIR:AT1G27370.4); Has 855 Blast hits to 854 proteins in 39 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 855; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
BioGrid:24860DIP:DIP-60246NeggNOG:ENOG410IJWKeggNOG:ENOG410YVZE
EMBL:AC004557EMBL:AJ011634EMBL:AJ011635EMBL:AY070106
EMBL:AY088185EMBL:AY091286EMBL:CP002684EnsemblPlants:AT1G27360
EnsemblPlants:AT1G27360.1EnsemblPlants:AT1G27360.2EnsemblPlants:AT1G27360.3EnsemblPlants:AT1G27360.4
entrez:839625Gene3D:4.10.1100.10GeneID:839625Genevisible:Q9FZK0
GO:GO:0003677GO:GO:0003700GO:GO:0005634GO:GO:0006351
GO:GO:0006355GO:GO:0046872GO:GO:0048510Gramene:AT1G27360.1
Gramene:AT1G27360.2Gramene:AT1G27360.3Gramene:AT1G27360.4hmmpanther:PTHR31251
hmmpanther:PTHR31251:SF1HOGENOM:HOG000070897InParanoid:Q9FZK0IntAct:Q9FZK0
InterPro:IPR004333KEGG:ath:AT1G27360OMA:EWEIEKGPaxDb:Q9FZK0
Pfam:PF03110Pfam:Q9FZK0Pfscan:PS51141PhylomeDB:Q9FZK0
PIR:B86399PIR:T52598PRIDE:Q9FZK0PRO:PR:Q9FZK0
PROSITE:PS51141ProteinModelPortal:Q9FZK0Proteomes:UP000006548RefSeq:NP_001077603.1
RefSeq:NP_001077604.1RefSeq:NP_564280.1RefSeq:NP_973920.1SMR:Q9FZK0
STRING:3702.AT1G27360.1SUPFAM:SSF103612TAIR:AT1G27360tair10-symbols:SPL11
UniGene:At.497UniProt:Q9FZK0
Coordinates (TAIR10) chr1:+:9502139..9503715
Molecular Weight (calculated) 43866.20 Da
IEP (calculated) 8.14
GRAVY (calculated) -0.72
Length 393 amino acids
Sequence (TAIR10)
(BLAST)
001: MDCNMVSSSQ WDWEHLIMSN PSRTEDDSKQ LPTEWEIEKG EGIESIVPHF SGLERVSSGS ATSFWHTAVS KSSQSTSINS SSPEAKRCKL ASESSPGDSC
101: SNIDFVQVKA PTALEVSVAS AESDLCLKLG KRTYSEEYWG RNNNEISAVS MKLLTPSVVA GKSKLCGQSM PVPRCQIDGC ELDLSSAKGY HRKHKVCEKH
201: SKCPKVSVSG LERRFCQQCS RFHAVSEFDE KKRSCRKRLS HHNARRRKPQ GVFSMNPERV YDRRQHTNML WNGVSLNARS EEMYEWGNNT YDTKPRQTEK
301: SFTLSFQRGN GSEDQLVASS SRMFSTSQTS GGFPAGKSKF QLHGEDVGEY SGVLHESQDI HRALSLLSTS SDPLAQPHVQ PFSLLCSYDV VPK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)