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AT3G29800.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
mitochondrion 1.000
ASURE: mitochondrion
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : P-loop containing nucleoside triphosphate hydrolases superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: ATPase activity, ATP binding; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT5G17740.1); Has 2104 Blast hits to 2091 proteins in 363 species: Archae - 81; Bacteria - 262; Metazoa - 327; Fungi - 463; Plants - 721; Viruses - 5; Other Eukaryotes - 245 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0465eggNOG:KOG0743EMBL:AP000736EMBL:CP002686
EnsemblPlants:AT3G29800EnsemblPlants:AT3G29800.1entrez:822695Gene3D:3.40.50.300
GeneID:822695GO:GO:0005524GO:GO:0016787Gramene:AT3G29800.1
hmmpanther:PTHR23070hmmpanther:PTHR23070:SF35HOGENOM:HOG000237995IntAct:Q9LJ50
InterPro:IPR003959InterPro:IPR027417KEGG:ath:AT3G29800OMA:YSSTHAY
Pfam:PF00004PhylomeDB:Q9LJ50Proteomes:UP000006548RefSeq:NP_189629.1
SMR:Q9LJ50STRING:3702.AT3G29800.1SUPFAM:SSF52540TAIR:AT3G29800
UniGene:At.53586UniProt:Q9LJ50
Coordinates (TAIR10) chr3:+:11720096..11722103
Molecular Weight (calculated) 51108.10 Da
IEP (calculated) 6.51
GRAVY (calculated) -0.45
Length 440 amino acids
Sequence (TAIR10)
(BLAST)
001: MMLKLIKSMV QAITRPIQYL IISYLRYLVG PPSLTHHDNQ VTVIIEETSE NGRINVIHGA TQAYLFDKIN LDFVEEREFD DIYQGAKLKW RIFVDKNNIG
101: NIPKQCFELR FDEKHRDLVF DSYIPFVESK AKEIKSKKRI LEMHTYSHCC DTWETKILDH HSSFETIVMK EDLKRRLIDD IDLFISKEDF YKRVGRHWMR
201: YYLLHGLPGA GKTSLVAAIA KYLNFDVYNI TQGVKTDFDT RRLIRRVEDS SILLVEDIDT SLEGSKVALS QLLSSLTWPW SNGKARVVIF TTNNKERFDQ
301: TLLCRMEMKI YMGHCCFEDF KTLASNYLGI SHDNDAPHRL YPDIKRLIDG QAVTPGQVVE ELMKSQDVDV ALQSLVRYSS SKENDHIDDD LPQIPEETRK
401: NSNLDSKPRK SQTIIVEALN QVRCNETETG SNIDYSSNEK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)