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AT4G33260.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
nucleus 0.999
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
FP Images

7-day old Arabidopsis seedling (no marker)

RFP-At4g33260
(full-length)
overlay

SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Transducin family protein / WD-40 repeat family protein
Curator
Summary (TAIR10)
putative cdc20 protein (CDC20.2)
Computational
Description (TAIR10)
CDC20.2; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40 repeat, conserved site (InterPro:IPR019775), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin family protein / WD-40 repeat family protein (TAIR:AT4G33270.1); Has 49557 Blast hits to 24743 proteins in 707 species: Archae - 58; Bacteria - 7555; Metazoa - 19332; Fungi - 10955; Plants - 5960; Viruses - 0; Other Eukaryotes - 5697 (source: NCBI BLink).
Protein Annotations
BioGrid:14747eggNOG:ENOG410XQ8IeggNOG:KOG0305EMBL:AF029263
EMBL:AL035678EMBL:AL161583EMBL:CP002687EnsemblPlants:AT4G33260
EnsemblPlants:AT4G33260.1entrez:829462Gene3D:2.130.10.10GeneID:829462
Genevisible:Q9S7I8GO:GO:0005634GO:GO:0007067GO:GO:0016567
GO:GO:0019900GO:GO:0033597GO:GO:0051301GO:GO:0051488
GO:GO:0097027hmmpanther:PTHR19918HOGENOM:HOG000195514InParanoid:Q9S7I8
InterPro:IPR001680InterPro:IPR015943InterPro:IPR017986InterPro:IPR019775
InterPro:IPR024977InterPro:IPR033010KEGG:ath:AT4G33260KO:K03363
OMA:PVEAIPNPANTHER:PTHR19918PaxDb:Q9S7I8Pfam:PF00400
Pfam:PF12894Pfam:Q9S7I8Pfscan:PS50082Pfscan:PS50294
PhylomeDB:Q9S7I8PIR:T05977PRO:PR:Q9S7I8PROSITE:PS00678
PROSITE:PS50082PROSITE:PS50294ProteinModelPortal:Q9S7I8Proteomes:UP000006548
Reactome:R-ATH-141405Reactome:R-ATH-141430Reactome:R-ATH-174184Reactome:R-ATH-179409
RefSeq:NP_001190900.1RefSeq:NP_195052.1scanprosite:PS00678SMART:SM00320
SMR:Q9S7I8STRING:3702.AT4G33260.1SUPFAM:SSF50978TAIR:AT4G33260
tair10-symbols:CDC20.2UniGene:At.48930UniPathway:UPA00143UniProt:Q9S7I8
Coordinates (TAIR10) chr4:-:16041233..16043180
Molecular Weight (calculated) 49506.20 Da
IEP (calculated) 8.18
GRAVY (calculated) -0.48
Length 447 amino acids
Sequence (TAIR10)
(BLAST)
001: MDAGLNRCPL QEHFLPRKNS KENLDRFIPN RSAMNFDYAH FALTEERKGK DQSATVSSPS KEAYRKQLAE TMNLNHTRIL AFRNKPQAPV ELLPSNHSAS
101: LHQQPKSVKP RRYIPQTSER TLDAPDIVDD FYLNLLDWGS ANVLAIALDH TVYLWDASTG STSELVTIDE EKGPVTSINW APDGRHVAVG LNNSEVQLWD
201: SASNRQLRTL KGGHQSRVGS LAWNNHILTT GGMDGLIINN DVRIRSPIVE TYRGHTQEVC GLKWSGSGQQ LASGGNDNVV HIWDRSVASS NSTTQWLHRL
301: EEHTSAVKAL AWCPFQANLL ATGGGGGDRT IKFWNTHTGA CLNSVDTGSQ VCSLLWSKNE RELLSSHGFT QNQLTLWKYP SMVKMAELTG HTSRVLYMAQ
401: SPDGCTVASA AGDETLRFWN VFGVPETAKK AAPKAVAEPF SHVNRIR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)