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AT4G14770.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : TESMIN/TSO1-like CXC 2
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
TESMIN/TSO1-like CXC 2 (TCX2); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: chloroplast; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Tesmin/TSO1-like, CXC (InterPro:IPR005172); BEST Arabidopsis thaliana protein match is: Tesmin/TSO1-like CXC domain-containing protein (TAIR:AT3G22780.1); Has 1250 Blast hits to 741 proteins in 97 species: Archae - 0; Bacteria - 6; Metazoa - 464; Fungi - 8; Plants - 353; Viruses - 0; Other Eukaryotes - 419 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG4110UR5eggNOG:KOG1171EMBL:AL161539EMBL:CP002687
EMBL:Z97337EnsemblPlants:AT4G14770EnsemblPlants:AT4G14770.1entrez:827132
GeneID:827132Genevisible:F4JIF5GO:GO:0005634GO:GO:0007275
GO:GO:0046872Gramene:AT4G14770.1hmmpanther:PTHR12446hmmpanther:PTHR12446:SF21
InParanoid:F4JIF5InterPro:IPR005172InterPro:IPR028307InterPro:IPR033467
iPTMnet:F4JIF5KEGG:ath:AT4G14770ncoils:CoilOMA:CDWENLI
PANTHER:PTHR12446PaxDb:F4JIF5Pfam:F4JIF5Pfam:PF03638
Pfscan:PS51634PIR:F71410PRIDE:F4JIF5PRO:PR:F4JIF5
PROSITE:PS51634ProteinModelPortal:F4JIF5Proteomes:UP000006548RefSeq:NP_193213.5
SMART:SM01114STRING:3702.AT4G14770.1TAIR:AT4G14770tair10-symbols:ATTCX2
tair10-symbols:TCX2UniGene:At.23380UniProt:F4JIF5
Coordinates (TAIR10) chr4:-:8481522..8484825
Molecular Weight (calculated) 74057.40 Da
IEP (calculated) 5.48
GRAVY (calculated) -0.71
Length 674 amino acids
Sequence (TAIR10)
(BLAST)
001: MDTPQKSITQ IGTPISKSRF EDSPVFNYIN SLSPIRPVRS IPNPNQFSSL NFTSPPSVFT SPHLTSSHKE SRFFKTHNSS SSDPTNSVES QEDESTSHEE
101: VPAEGEDTKG LNIDDCMREE ASVETNLDDS VASPCGGNTT DLSLVPYAPT RGEDGSCEDN GMELQKMHDN VQGKTETPDW ESLIADASEL LIFDSPDASE
201: AFRCFMMQRA SNSEARFRNG VEKQTMQHDS NKEPESANAI PYEAVSLLHR GIRRRCLDFE MPGNKQTSSE NNTAACESSS RCVVPSIGLH LNAILMSSKD
301: CKTNVTQDYS CSANIQVGLQ RSISTLQDSL DQTENEIRED ADQDVPVEPA LQELNLSSPK KKRVKLDSGE GESCKRCNCK KSKCLKLYCE CFAAGVYCIE
401: PCSCIDCFNK PIHEDVVLAT RKQIESRNPL AFAPKVIRNS DSVQETGDDA SKTPASARHK RGCNCKKSNC LKKYCECYQG GVGCSINCRC EGCKNAFGRK
501: DGSSIDMEAE QEEENETSEK SRTAKSQQNT EVLMRKDMSS ALPTTPTPIY RPELVQLPFS SSKNRMPPPQ SLLGGGSSSG IFNSQYLRKP DISLSQSRIE
601: KSFETVAVDG AEQMPEILIH SPIPNIKSVS PNGKRVSPPH MESSSSGSIL GRRNGGRKLI LQSIPSFPSL TPQH
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)