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AT4G38340.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
nucleus 0.998
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Plant regulator RWP-RK family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Plant regulator RWP-RK family protein; CONTAINS InterPro DOMAIN/s: Octicosapeptide/Phox/Bem1p (InterPro:IPR000270), Plant regulator RWP-RK (InterPro:IPR003035), GAF (InterPro:IPR003018); BEST Arabidopsis thaliana protein match is: Plant regulator RWP-RK family protein (TAIR:AT1G76350.1); Has 720 Blast hits to 573 proteins in 47 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 7; Plants - 646; Viruses - 0; Other Eukaryotes - 63 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IKB2eggNOG:ENOG4110HDWEMBL:AL035539EMBL:AL161593
EMBL:CP002687EnsemblPlants:AT4G38340EnsemblPlants:AT4G38340.1entrez:829991
GeneID:829991Genevisible:Q9SVF1GO:GO:0003677GO:GO:0003700
GO:GO:0005634GO:GO:0006351GO:GO:0006355Gramene:AT4G38340.1
hmmpanther:PTHR32002hmmpanther:PTHR32002:SF3HOGENOM:HOG000237689InParanoid:Q9SVF1
InterPro:IPR000270InterPro:IPR003035InterPro:IPR029016KEGG:ath:AT4G38340
OMA:VMDSVEGPaxDb:Q9SVF1Pfam:PF00564Pfam:PF02042
Pfam:Q9SVF1Pfscan:PS51519Pfscan:PS51745PhylomeDB:Q9SVF1
PIR:T05662PRIDE:Q9SVF1PRO:PR:Q9SVF1PROSITE:PS51519
PROSITE:PS51745ProteinModelPortal:Q9SVF1Proteomes:UP000006548RefSeq:NP_195547.1
SMART:SM00666STRING:3702.AT4G38340.1SUPFAM:SSF54277SUPFAM:SSF55781
TAIR:AT4G38340TMHMM:TMhelixUniGene:At.31180UniProt:Q9SVF1
Coordinates (TAIR10) chr4:+:17954710..17957828
Molecular Weight (calculated) 85071.30 Da
IEP (calculated) 8.14
GRAVY (calculated) -0.27
Length 767 amino acids
Sequence (TAIR10)
(BLAST)
001: MVGPFKKILH AHNQRFPPSS SSSLDPVVDD SSRKQTRIIL SYLLHLSLSL HITYSLCLLH FFFGSSNPFS PMEESNNSAV VDFPDNFMDQ LLWEECWEEE
101: ATQHDQALSS PSGLKERVAC AMGHLQEVMG ERELLIQLWV PVETRSGRVL STEEQPYSIN TFSQSQSLAL YRDASAGYSF AAEVGSEQLV GLPGRVFLRR
201: MPEWTPDVRF FRKEEYPRIG YARRYQVRAT LALPLFQGTS GNCVAVMEMV TTHRNLEYAS QLSTICHALE AFDLRTSQTS IVPASLKVTS SSSSSSRTEV
301: ASILQGICSS HGLPLAVTWG HQDSSSCLSA LISASYAADH GSRCFLAACS EHHLLGGEGI AGRAFATKKQ CFATDVAIFS KWSYPLSHYA KMFDLHAALA
401: VPILTRGNRT VQFVLELFFP RDCLDIQTHS LTLASQLKLR FQSSPHLMVD DNQIAEEVRD AATPPLTQED PKGKQVSFSF SSASSLENRK RKTKAEKDIT
501: LDTLRQHFAG SLKDAAKNIG VCPTTLKRIC RQNGISRWPS RKIKKVGHSL RKLQVVMDSV EGVQGSLHLA SFYSSFPQLQ SSSSSSFPFI NPTQTVHVPP
601: KSPPSSSGSQ SSSGSSTCCS SEEQQLGGFQ KPALSHPQLL TLSSMHEDQR PVRVTSSLPP LPSATTPRKA KDGMKVKAMF GDSMLRMSLL PHSRLTDLRR
701: EIAKRFGMDD VLRSNFSLKY LDDDQEWVLL TCDADLEECI QVYKSSSLKE TIRILVHHPL SRPSFGS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)