AT4G38340.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:nucleus 0.998 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : Plant regulator RWP-RK family protein | ||||||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
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Computational Description (TAIR10) |
Plant regulator RWP-RK family protein; CONTAINS InterPro DOMAIN/s: Octicosapeptide/Phox/Bem1p (InterPro:IPR000270), Plant regulator RWP-RK (InterPro:IPR003035), GAF (InterPro:IPR003018); BEST Arabidopsis thaliana protein match is: Plant regulator RWP-RK family protein (TAIR:AT1G76350.1); Has 720 Blast hits to 573 proteins in 47 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 7; Plants - 646; Viruses - 0; Other Eukaryotes - 63 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr4:+:17954710..17957828 | ||||||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 85071.30 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 8.14 | ||||||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.27 | ||||||||||||||||||||||||||||||||||||||||||||||||
Length | 767 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MVGPFKKILH AHNQRFPPSS SSSLDPVVDD SSRKQTRIIL SYLLHLSLSL HITYSLCLLH FFFGSSNPFS PMEESNNSAV VDFPDNFMDQ LLWEECWEEE 101: ATQHDQALSS PSGLKERVAC AMGHLQEVMG ERELLIQLWV PVETRSGRVL STEEQPYSIN TFSQSQSLAL YRDASAGYSF AAEVGSEQLV GLPGRVFLRR 201: MPEWTPDVRF FRKEEYPRIG YARRYQVRAT LALPLFQGTS GNCVAVMEMV TTHRNLEYAS QLSTICHALE AFDLRTSQTS IVPASLKVTS SSSSSSRTEV 301: ASILQGICSS HGLPLAVTWG HQDSSSCLSA LISASYAADH GSRCFLAACS EHHLLGGEGI AGRAFATKKQ CFATDVAIFS KWSYPLSHYA KMFDLHAALA 401: VPILTRGNRT VQFVLELFFP RDCLDIQTHS LTLASQLKLR FQSSPHLMVD DNQIAEEVRD AATPPLTQED PKGKQVSFSF SSASSLENRK RKTKAEKDIT 501: LDTLRQHFAG SLKDAAKNIG VCPTTLKRIC RQNGISRWPS RKIKKVGHSL RKLQVVMDSV EGVQGSLHLA SFYSSFPQLQ SSSSSSFPFI NPTQTVHVPP 601: KSPPSSSGSQ SSSGSSTCCS SEEQQLGGFQ KPALSHPQLL TLSSMHEDQR PVRVTSSLPP LPSATTPRKA KDGMKVKAMF GDSMLRMSLL PHSRLTDLRR 701: EIAKRFGMDD VLRSNFSLKY LDDDQEWVLL TCDADLEECI QVYKSSSLKE TIRILVHHPL SRPSFGS |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)