suba logo
AT1G70260.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
plasma membrane 0.976
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : nodulin MtN21 /EamA-like transporter family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
nodulin MtN21 /EamA-like transporter family protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: endomembrane system, membrane; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF6, transmembrane (InterPro:IPR000620); BEST Arabidopsis thaliana protein match is: Nodulin MtN21 /EamA-like transporter family protein (TAIR:AT1G60050.1); Has 1237 Blast hits to 1229 proteins in 44 species: Archae - 0; Bacteria - 23; Metazoa - 0; Fungi - 0; Plants - 1190; Viruses - 0; Other Eukaryotes - 24 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IWFYeggNOG:ENOG41117F8EMBL:AC002062EMBL:BX815890
EMBL:CP002684EnsemblPlants:AT1G70260EnsemblPlants:AT1G70260.1entrez:843362
GeneID:843362GO:GO:0005886GO:GO:0006810GO:GO:0016021
GO:GO:0022857GO:GO:0055085Gramene:AT1G70260.1hmmpanther:PTHR31218
hmmpanther:PTHR31218:SF61HOGENOM:HOG000237441InParanoid:F4I5D5InterPro:IPR000620
InterPro:IPR030184KEGG:ath:AT1G70260OMA:LPDNWFLPANTHER:PTHR31218
PaxDb:F4I5D5Pfam:F4I5D5Pfam:PF00892PIR:F96725
PIR:G96725PRIDE:F4I5D5PRO:PR:F4I5D5ProteinModelPortal:F4I5D5
Proteomes:UP000006548RefSeq:NP_177183.2SUPFAM:0043518TAIR:AT1G70260
TMHMM:TMhelixUniGene:At.50022UniProt:F4I5D5
Coordinates (TAIR10) chr1:-:26457067..26459338
Molecular Weight (calculated) 42168.90 Da
IEP (calculated) 9.65
GRAVY (calculated) 0.42
Length 375 amino acids
Sequence (TAIR10)
(BLAST)
001: MEVKVRRDEL VPFVAMAIME ACTIALTIMA KTALTGGMSP FVFVVYTNAF GSILLLPFSF LFHRNERTEQ SIFSWPLLVR VFFLGFTGIF MFQNLAFVGL
101: RFSSPIVVCA MGLQIPSFSF LLSIILGRSK LDWRNTSTRA KLMGTIVSLS GAFVEELYKG PFIRPASSAS PNRFLKSVPK LLVYYNLPDN WFLGCIFLAV
201: AVFSVSLFNV VQTGTVKKYP HVMKVASFYS IVGTIQCLLF SLFMERDLSA WKIQPNFDLY LIIATGTFGS VIRTSVHVKC TQMKGPYYVP LFKPFGIFWA
301: TLFGTSFFVN SLHYGSVLGA AIAGVGYFTV SWGQLKESEE KQSSNEERKS IKTIHHRDED EYKVPLLINQ EESPV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)