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AT5G64550.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
nucleus 0.996
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : loricrin-related
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
loricrin-related; BEST Arabidopsis thaliana protein match is: loricrin-related (TAIR:AT5G09670.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IE6BeggNOG:ENOG410YI5XEMBL:AB010076EMBL:AY090946
EMBL:AY142673EMBL:CP002688EnsemblPlants:AT5G64550EnsemblPlants:AT5G64550.1
entrez:836576GeneID:836576Gramene:AT5G64550.1hmmpanther:PTHR31827
hmmpanther:PTHR31827:SF1HOGENOM:HOG000238085IntAct:Q9FLG3KEGG:ath:AT5G64550
OMA:FQRSIHAPhylomeDB:Q9FLG3Proteomes:UP000006548RefSeq:NP_201260.1
STRING:3702.AT5G64550.1TAIR:AT5G64550UniGene:At.28952UniProt:Q9FLG3
Coordinates (TAIR10) chr5:-:25801794..25803698
Molecular Weight (calculated) 65963.10 Da
IEP (calculated) 9.15
GRAVY (calculated) -0.51
Length 634 amino acids
Sequence (TAIR10)
(BLAST)
001: MDLNESVVHF SRGNGIAKLD NFGDTALSLK CLGSSAGRLI GSSHHNHKLC SDVSNCPDGG CRLVLGLGPT PPSYYYNVRV NDNNNKGSAS SGSVQELSSG
101: GNSILQLGPP AVTMDTFSGL EGSLLTYADT NVSQAAVDEG STSARRSGGY MPSLLFAPRT ENVRKPSRMQ ECSTNCGTDA YNSQLSHESE FSVSAFSDRS
201: ASATSSQQRM SNPKKCKFMG CVKGARGASG LCIGHGGGQR CQKLGCNKGA ESKTTFCKAH GGGKRCQHLG CTKSAEGKTD LCISHGGGRR CGFPEGCAKA
301: ARGKSGLCIK HGGGKRCRIE SCTRSAEGQA GLCISHGGGR RCQSSGCTKG AQGSTNYCKA HGGGKRCIFA GCTKGAEGST PLCKAHGGGK RCMFDGGGIC
401: PKSVHGGTSF CVAHGGGKRC VVAGCTKSAR GRTDCCVKHG GGKRCKSDGC EKSAQGSTDF CKAHGGGKRC SWGGDWKCEK FARGKSGLCA AHNSMSQDKA
501: GSKVGLIGPG LFRGLVSTSL QTTTTATTTT TTTDHSQSGV SAVSDCMDSI DRPLPPLHHQ PEKRQKLMIP MQVLVPPSMK SLSFSNTERP DIETNNNSSG
601: SNGRNIFDFM IPEERVHGGG LMSLLNGNMK QTLR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)