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AT4G20370.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 0.872
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data
Description (TAIR10) protein_coding : PEBP (phosphatidylethanolamine-binding protein) family protein
Curator
Summary (TAIR10)
Encodes a floral inducer that is a homolog of FT. Plants overexpressing this gene flower earlier than Col. Loss-of-function mutations flower later in short days. TSF and FT play overlapping roles in the promotion of flowering, with FT playing the dominant role.TSF sequences show extensive variation in different accessions and may contribute to quantitative variation in flowering time in these accessions. TSF has a complex pattern of spatial expression; it is expressed mainly in phloem and expression is regulated by daylength and vernalization.
Computational
Description (TAIR10)
TWIN SISTER OF FT (TSF); CONTAINS InterPro DOMAIN/s: Phosphatidylethanolamine-binding, conserved site (InterPro:IPR001858), Phosphatidylethanolamine-binding protein PEBP (InterPro:IPR008914); BEST Arabidopsis thaliana protein match is: PEBP (phosphatidylethanolamine-binding protein) family protein (TAIR:AT1G65480.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:COG1881eggNOG:KOG3346EMBL:AB204805EMBL:AB204807
EMBL:AB204808EMBL:AF152907EnsemblPlants:AT4G20370EnsemblPlants:AT4G20370.1
entrez:827785ExpressionAtlas:Q587R2Gene3D:3.90.280.10GeneID:827785
GO:GO:0008429GO:GO:0009909GO:GO:0048573Gramene:AT4G20370.1
hmmpanther:PTHR11362hmmpanther:PTHR11362:SF9InterPro:IPR001858InterPro:IPR008914
InterPro:IPR031095KEGG:ath:AT4G20370KO:K16223OMA:RQQFNTR
PANTHER:PTHR11362:SF9Pfam:PF01161Pfam:Q9S7R5PhylomeDB:Q587R2
PROSITE:PS01220ProteinModelPortal:Q9S7R5RefSeq:NP_193770.1scanprosite:PS01220
SMR:Q587R2STRING:3702.AT4G20370.1SUPFAM:SSF49777TAIR:AT4G20370
tair10-symbols:TSFUniGene:At.470UniProt:Q587R2UniProt:Q9S7R5
Coordinates (TAIR10) chr4:-:11001011..11002965
Molecular Weight (calculated) 19689.50 Da
IEP (calculated) 8.07
GRAVY (calculated) -0.28
Length 175 amino acids
Sequence (TAIR10)
(BLAST)
001: MSLSRRDPLV VGSVVGDVLD PFTRLVSLKV TYGHREVTNG LDLRPSQVLN KPIVEIGGDD FRNFYTLVMV DPDVPSPSNP HQREYLHWLV TDIPATTGNA
101: FGNEVVCYES PRPPSGIHRI VLVLFRQLGR QTVYAPGWRQ QFNTREFAEI YNLGLPVAAS YFNCQRENGC GGRRT
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)