AT1G31140.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : GORDITA | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a B-sister MADS-box protein, GORDITA which is specific to the Brassicaceae. GOA is the most closely related paralog of ABS. GOA represses fruit growth and contributes to integument development. Over-expression of GOA results in disorganized floral structure and addition of carpel-like features to sepals. | ||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
GORDITA (GOA); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: integument development, fruit development, fruit morphogenesis, regulation of timing of transition from vegetative to reproductive phase; LOCATED IN: nucleus; EXPRESSED IN: rosette leaf, embryo, cauline leaf, fruit, flower; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100), Transcription factor, K-box (InterPro:IPR002487); BEST Arabidopsis thaliana protein match is: K-box region and MADS-box transcription factor family protein (TAIR:AT5G23260.2); Has 6291 Blast hits to 6291 proteins in 841 species: Archae - 0; Bacteria - 0; Metazoa - 625; Fungi - 300; Plants - 5296; Viruses - 0; Other Eukaryotes - 70 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:11118031..11119673 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 24933.00 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.99 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.88 | ||||||||||||||||||||||||||||||||||||||||
| Length | 213 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MRKGKRVIKK IEEKIKRQVT FAKRKKSLIK KAYELSVLCD VHLGLIIFSH SNRLYDFCSN STSMENLIMR YQKEKEGQTT AEHSFHSCSD CVKTKESMMR 101: EIENLKLNLQ LYDGHGLNLL TYDELLSFEL HLESSLQHAR ARKSEFMHQQ QQQQTDQKLK GKEKGQGSSW EQLMWQAERQ MMTCQRQKDP APANEGGVPF 201: LRWGTTHRRS SPP |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)