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AT4G00180.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Plant-specific transcription factor YABBY family protein
Curator
Summary (TAIR10)
YABBY gene family member, likely has transcription factor activity, involved in specifying abaxial cell fate. Along with FIL, involved in patterning of the fruit. GUS reporter gene expression in seedlings is observed in the young leaves and as the leaf matures, expression is restricted to the abaxial tissues of leaves, expression is also observed on either side of the leaf margin in the younger tissues of leaf blades.
Computational
Description (TAIR10)
YABBY3 (YAB3); CONTAINS InterPro DOMAIN/s: High mobility group, superfamily (InterPro:IPR009071), YABBY protein (InterPro:IPR006780); BEST Arabidopsis thaliana protein match is: Plant-specific transcription factor YABBY family protein (TAIR:AT2G45190.1); Has 469 Blast hits to 469 proteins in 131 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 6; Plants - 442; Viruses - 2; Other Eukaryotes - 15 (source: NCBI BLink).
Protein Annotations
BioGrid:13205eggNOG:ENOG410JWPQeggNOG:ENOG41104REEMBL:AF069299
EMBL:AF136540EMBL:AL161471EMBL:AY037186EMBL:BT002662
EMBL:CP002687EnsemblPlants:AT4G00180EnsemblPlants:AT4G00180.1entrez:827914
ExpressionAtlas:Q9XFB1Gene3D:1.10.30.10GeneID:827914Genevisible:Q9XFB1
GO:GO:0003677GO:GO:0003700GO:GO:0005634GO:GO:0006355
GO:GO:0009944GO:GO:0010154GO:GO:0010158GO:GO:0046872
GO:GO:1902183GO:GO:2000024hmmpanther:PTHR31675hmmpanther:PTHR31675:SF0
HOGENOM:HOG000239859InParanoid:Q9XFB1IntAct:Q9XFB1InterPro:IPR006780
InterPro:IPR009071OMA:GGQNINMPANTHER:PTHR31675PaxDb:Q9XFB1
Pfam:PF04690Pfam:Q9XFB1PhylomeDB:Q9XFB1PIR:T01346
PRIDE:Q9XFB1PRO:PR:Q9XFB1ProteinModelPortal:Q9XFB1Proteomes:UP000006548
RefSeq:NP_567154.1STRING:3702.AT4G00180.1SUPFAM:SSF47095TAIR:AT4G00180
tair10-symbols:YAB3UniGene:At.11867UniProt:Q9XFB1
Coordinates (TAIR10) chr4:-:72804..75089
Molecular Weight (calculated) 26339.50 Da
IEP (calculated) 8.53
GRAVY (calculated) -0.46
Length 240 amino acids
Sequence (TAIR10)
(BLAST)
001: MSSMSMSSSS APAFPPDHFS STDQLCYVHC SFCDTVLAVS VPPSSLFKTV TVRCGHCSNL LSVTVSMRAL LLPSVSNLGH SFLPPPPPPP PPNLLEEMRS
101: GGQNINMNMM MSHHASAHHP NEHLVMATRN GRSVDHLQEM PRPPPANRPP EKRQRVPSAY NRFIKEEIQR IKAGNPDISH REAFSAAAKN WAHFPHIHFG
201: LMADHPPTKK ANVRQQEGED GMMGREGFYG SAANVGVAHN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)