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AT1G08465.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Plant-specific transcription factor YABBY family protein
Curator
Summary (TAIR10)
Member of the YABBY family of Arabidopsis proteins involved in the abaxial cell fate specification in lateral organs
Computational
Description (TAIR10)
YABBY2 (YAB2); CONTAINS InterPro DOMAIN/s: High mobility group, superfamily (InterPro:IPR009071), YABBY protein (InterPro:IPR006780); BEST Arabidopsis thaliana protein match is: plant-specific transcription factor YABBY family protein (TAIR:AT2G26580.2); Has 446 Blast hits to 444 proteins in 124 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 433; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).
Protein Annotations
BioGrid:527043eggNOG:ENOG410IXZ0eggNOG:ENOG410YHWIEMBL:AC006932
EMBL:AF136539EMBL:CP002684EnsemblPlants:AT1G08465EnsemblPlants:AT1G08465.1
entrez:3766682GeneID:3766682GO:GO:0003677GO:GO:0003700
GO:GO:0005634GO:GO:0006355GO:GO:0007275GO:GO:0010158
GO:GO:0046872Gramene:AT1G08465.1hmmpanther:PTHR31675hmmpanther:PTHR31675:SF2
HOGENOM:HOG000239859InParanoid:Q9XFB0InterPro:IPR006780InterPro:IPR009071
KEGG:ath:AT1G08465OMA:RQNESSIPANTHER:PTHR31675PaxDb:Q9XFB0
Pfam:PF04690Pfam:Q9XFB0PhylomeDB:Q9XFB0PRO:PR:Q9XFB0
ProteinModelPortal:Q9XFB0Proteomes:UP000006548RefSeq:NP_001077490.1STRING:3702.AT1G08465.1
SUPFAM:SSF47095TAIR:AT1G08465tair10-symbols:YAB2TMHMM:TMhelix
UniGene:At.11866UniProt:Q9XFB0
Coordinates (TAIR10) chr1:+:2676033..2679382
Molecular Weight (calculated) 20701.60 Da
IEP (calculated) 9.56
GRAVY (calculated) -0.52
Length 184 amino acids
Sequence (TAIR10)
(BLAST)
001: MSVDFSSERV CYVHCSFCTT ILAVSVPYAS LFTLVTVRCG HCTNLLSLNI GVSLHQTSAP PIHQDLQPHR QHTTSLVTRK DCASSSRSTN NLSENIDREA
101: PRMPPIRPPE KRQRVPSAYN RFIKEEIQRI KACNPEISHR EAFSTAAKNW AHFPHIHFGL KLDGNKKGKQ LDQSVAGQKS NGYY
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)